Home > Keyword search > Contig06586

Summary
Sequence ID 
Sequence Length 776 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold07758
 Scaffold07759
Related probe ID of RIKEN ver.1 microarray  R_Mes01_006102 (Scaffold07758)
 R_Mes01_006103 (Scaffold07759)
 
 
Sequence
>Contig06586
TGAAGTGGCACCCTACGATTCGAGAATCCTCAAGCTTTCTTATCCAGACACTGAAAAACCGAGATTTCTGTCTAGAGTTT
CATTTCGTTAGAGATGAACGGCGGCGATGCTTACGGTGCTGTGGAGGCACAGTACATACGTAGACACCATAGACACCAGC
CTAGAGAGAACCAGTGCACTTCTACTCTTGTCAAGCACATTAAAGCTCCTGTTCATCTTGTGTGGTCACTGGTGAGGCGA
TTCGATCAGCCACAGAAATACAAGCCATTTGTGAGTAGGTGCGTTGTGAATGGGGAGAGTGGGGAGCCTGGGATTGGAAG
TGTCAGGGAAGTCAATGTTAAATCTGGACTCCCCGCTACCACTAGCACCGAGAGGCTGGAACTCCTTGATGATGAGGAGC
ACATTCTTGGAATCAAGATTGTTGGTGGTGATCATAGGCTTAAGAACTACTCGTCTATCATGACTGTCCATCCAGAGATT
GTTGATGGAAGGCCTGGAACGTTGGTCATAGAGTCGTTTGTGGTGGATGTGCCTGATGGGAACACCAAGGATGAGACATG
TTACTTTGTGAAGGCACTCATCAAGTGCAATCTCAAATCTCTGGCTGATGTCTCTGAGAGGATGGCAGTGCAGGACCGAG
TTGAACCCATCAACCGGTTCTGAATAGGTGGTTTCTGAATATGTGATGATGGTCTATTAGGATGGCTGTTCCTTTCGAGG
GTTCTAATTCCAGGGGCTTTGTAGAGATTGATGGGAGTACTCCACTATTCCCAGAA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002523369.1| conserved hypothetical protein [Ricinus communis] gb|EEF39085.1| conserved hypothetical protein [Ricinus communis] 350 1e-94
  Manihot esculenta blastn  cassava4.1_017001m|PACid:17978517 1106 0.0
  FGENESH CDS blastn  scaffold03581_FGENESH95 3 exon (s) 754535 - 756689 573 bp, chain + 724 0.0
  Arabidopsis thaliana blastx  AT1G01360.1 | Symbols: RCAR1, PYL9 | regulatory component of ABA receptor 1 | chr1:142138-142914 FORWARD LENGTH=187 300 9e-82
  Populus trichocarpa blastx  POPTR_0014s09280.1|PACid:18224353 350 7e-97
  Vitis vinifera blastx  GSVIVT01019517001|PACid:17829125 316 9e-87
  Ricinus communis blastx  29742.m001442|PACid:16807672 350 3e-97
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: Contig06586_1_ORF1  Length: 195 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[66-147]T 0.003 PD000531 Q9ZPP8_LILLO_Q9ZPP8;Q9ZPP8_LILLO_Q9ZPP8;
noIPR
unintegrated
unintegrated
SSF55961[32-178]T 2.1e-34 SSF55961 Bet v1-likeBet v1-like
Sequence: Contig06586_2_ORF2  Length: 57 aa
No hits reported.
Sequence: Contig06586_4_ORF2  Length: 155 aa
No hits reported.
Sequence: Contig06586_6_ORF2  Length: 67 aa
No hits reported.
Sequence: Contig06586_6_ORF3  Length: 61 aa
noIPR
unintegrated
unintegrated
seg[12-25]? NA seg seg[28-47]? NA seg segseg