Home > Keyword search > Contig06032

Summary
Sequence ID 
Sequence Length 543 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06746
 Scaffold07225
Probe ID of RIKEN ver.1 microarray  -
 
 
Sequence
>Contig06032
GGGTGTGGACTGGCGAAACGGAGAGAGTTTTGTTTTTTCTTTTTTTTTTTTTTGATTTTTTTTGCCCCTCCTCGTTTTTA
ATGGAGTACGGTGGCTGGGAAACGACGGCGGGGAAGACTAAAACGGCAACGCCTAATAGCTGGGCACAGCAGACGGAAGA
GAGTTACCAGCTGCAGCGGGCGCTAGCTTTGAGGTTGTCTTCTCAAGCAGCTTTAGCTAATGATCCTAATTTCTTGGTTT
TCAAATCCGATGATCGTTTAGGAGGAATCGATTCTTTCTCTGATTCTGCTGAAGCCGTTTCTCATCGATTTTGGGTAAAT
GGAAGTCTCACTTACTTTGACAAAATCCCAGATGGGTTTTATCTAATCCATGGGGTGGATCCTTATGCTTGGACTTTAAG
TACAGATCAGCAAGATATTGGCCTGGACCCATCTTTTGAATCCTTAAAGGCGCTTGATCCTTGTGCTGATTTATCAATAA
AAGTGGTTTCAGTTGACAGATTCAGGGATCCTGGTCTGAAAGAGCTGCTCAATAGTGTTATTA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002530885.1| map3k delta-1 protein kinase, putative [Ricinus communis] gb|EEF31491.1| map3k delta-1 protein kinase, putative [Ricinus communis] 219 1e-55
  Manihot esculenta blastn  cassava4.1_003345m|PACid:17978355 910 0.0
  FGENESH CDS blastn  scaffold04116_FGENESH9 14 exon (s) 123695 - 130076 2058 bp, chain - 910 0.0
  Arabidopsis thaliana blastx  AT5G03730.1 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821 155 2e-38
  Populus trichocarpa blastx  POPTR_0010s24110.1|PACid:18239640 178 3e-45
  Vitis vinifera blastx  GSVIVT01034710001|PACid:17840095 167 2e-42
  Ricinus communis blastx  29428.m000323|PACid:16802839 219 5e-58
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig06032_3_ORF1  Length: 180 aa
noIPR
unintegrated
unintegrated
seg[10-20]? NA seg seg[56-72]? NA seg segseg
Sequence: Contig06032_4_ORF1  Length: 57 aa
No hits reported.
Sequence: Contig06032_5_ORF2  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[35-45]? NA seg segseg