Sequence ID | ||
Sequence Length | 1777 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold06991 Scaffold06992 | |
Probe ID of RIKEN ver.1 microarray | - |
>Contig05827 GGGGGTTTTTAGCTCTGCCGGAAAATACCAATTGAGTCTCTCATGGCTATTCGGGGATTGCGAAACTTGACTTCTCCTCC ATCTTCTTCACTCTTCAAGGTACGGTCTCTTACTCAATGGAGTCCTGAAGCTCAAAACTATACCCAATACCAAAACCCAA ATCAGGCGAACCCTAATCGGTTGAATTATCCTACTCACAACTTTGCCCATCAGCAGCGGCAACCACAACAAAATCCTAAT CAGTGGAATTCCGGTACCCAAAACTATCCTCAATACCCAAATCCTGGTCAGGTGCGCCCTAATGTACAGGATTATCGGCA ACCAACTCGGTGGAACAATCAAAATCAGGGGCACCCTCAAGCAAGAAACCCTGTTCAGTGGGCTCCTCAGGGTCAAAATC CAAATGAAGGACGTGGGGCCTTGGAGACTCGAGCATCTCCGGCTCCAGCTCCAGCCCCTTCAACGTTGGATTTGATGCAT TTGTGTCAGGAGGGAAAGGTTAAGGATGCTATAGAGTTGATGGATAAAGGGGTTAAAGCTGATGCTGATTGTTTTTATGC TTTGTTCGAGTTGTGCAGCAAATTTGAGGATGCCAAAAAAGTACATGATTACTTTTTGCAATCAACATATAGAGGTGATC TCAAGTTTAACAATAAGGTGATTGAAATGTATGGAAAATGTGCAAGTATGACTGATGCTAGGAGAGTTTTTGATCATATG CCGGATAGGAATATGGATTCATGGCATCTGATGATAAACGGGTATGCAAATAATAATCTGGGAGATGAAGGGTTGCAATT GTTTGAGCAGATGAGGAAATTGGGGTTGAAGCCTACTGAGGATACGTTCCTTGCAGTTTTGTCTGCATGTGCCAGTGCAG ATGCAGTGGAGGAAGGATAATTACATTTTGAGTCAATGAAGAATGAGTATGGAATTAATCCAGGGATGCAACATTATTTG GGGGTTATAGATATTCTTGGAAAGTCTGGCTATGTTAATGAAATTGAAGAGTACATTGAGAAACTGCCATTTGCGCCCAC AGTGGAAATCTGGGATGCATTCAGGAATTATGCTCGAATTCATGGAGATATTGATCTTGAAGACCGTGCTGAGGAGTTGA TGGTTGCTCTTGACCCATCAAAGTCTGTTGCTAACAAGATCCCTACACCGCTGCCAAAGAAATATTCTGCAATCAGCATG CTTGAAGGAAAGAATAGAATTCCTGAGTTTCGGAATCCTACCCTTTACAAAGATGATGAGAAATTGAAGGCAATGAGTAA GGCTGTGAGTTATGTGCCAGATACTAGATATGTTCTTCATGACATTGATCAAGAAGCCAAGGAGCAAGCCCTGTTATATC ACAGTGAGCGTTTGGCAATTGCATATGGTCTCATCAGTACGCCTGCAAGAACACCCTTGAGGATCATTAAGAACCTTCGT GTGTGTGGTGATTGTCACAATGCTATCAAGATCATGTCCAGGATTGTTGGGAGGGAATTGATTGTTAGGGATAACAAAAG ATTTCATCATTTCAAGGATGGCAGTTGCTCTTGTGGAGATTACTGGTGAAGTTATCAACTCAAAACTCTTCTTATGTTGC CATTATCTCTTCAAGGAGAAGTTTTGATTTGTAAAGTGCCATATCTTCTGAACCATGTCTGCTTATGTGGATGGTTAAAC TAGCACATCTAGTATCTGAACTTTTTACTGCTTAACTTGTATGGCCTAGTTGTTTTAATGATCAGTTAATTATTTGTTAT GAGATTTCCCTGTGATT |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002285135.1| PREDICTED: hypothetical protein [Vitis vinifera] | 671 | 0.0 |
Manihot esculenta | blastn | cassava4.1_028274m|PACid:17989872 | 1552 | 0.0 |
FGENESH CDS | blastn | scaffold04795_FGENESH1 4 exon (s) 2832 - 4383 1287 bp, chain + | 1074 | 0.0 |
Arabidopsis thaliana | blastx | AT2G15690.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6831855-6833594 REVERSE LENGTH=579 | 532 | 1e-151 |
Populus trichocarpa | blastx | POPTR_0014s11190.2|PACid:18223589 | 353 | 3e-97 |
Vitis vinifera | blastx | GSVIVT01009619001|PACid:17821993 | 298 | 7e-81 |
Ricinus communis | blastx | 29801.m003193|PACid:16809043 | 629 | 1e-180 |
InterProScan |
No hits found |
Sequence: Contig05827_1_ORF2 Length: 295 aa | |||||||||||||
InterPro IPR002885 Repeat |
| ||||||||||||
noIPR unintegrated |
|
Sequence: Contig05827_1_ORF3 Length: 222 aa | ||||||||||
noIPR unintegrated |
|
Sequence: Contig05827_2_ORF2 Length: 96 aa | |
No hits reported. |
Sequence: Contig05827_4_ORF2 Length: 82 aa | |
No hits reported. |
Sequence: Contig05827_4_ORF3 Length: 71 aa | |
No hits reported. |
Sequence: Contig05827_4_ORF4 Length: 74 aa | |
No hits reported. |
Sequence: Contig05827_4_ORF5 Length: 53 aa | |
No hits reported. |
Sequence: Contig05827_4_ORF6 Length: 53 aa | |
No hits reported. |
Sequence: Contig05827_4_ORF7 Length: 123 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig05827_5_ORF2 Length: 66 aa | |
No hits reported. |
Sequence: Contig05827_6_ORF2 Length: 54 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig05827_6_ORF3 Length: 79 aa | |
No hits reported. |