Home > Keyword search > Contig05827

Summary
Sequence ID 
Sequence Length 1777 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06991
 Scaffold06992
Probe ID of RIKEN ver.1 microarray  -
 
 
Sequence
>Contig05827
GGGGGTTTTTAGCTCTGCCGGAAAATACCAATTGAGTCTCTCATGGCTATTCGGGGATTGCGAAACTTGACTTCTCCTCC
ATCTTCTTCACTCTTCAAGGTACGGTCTCTTACTCAATGGAGTCCTGAAGCTCAAAACTATACCCAATACCAAAACCCAA
ATCAGGCGAACCCTAATCGGTTGAATTATCCTACTCACAACTTTGCCCATCAGCAGCGGCAACCACAACAAAATCCTAAT
CAGTGGAATTCCGGTACCCAAAACTATCCTCAATACCCAAATCCTGGTCAGGTGCGCCCTAATGTACAGGATTATCGGCA
ACCAACTCGGTGGAACAATCAAAATCAGGGGCACCCTCAAGCAAGAAACCCTGTTCAGTGGGCTCCTCAGGGTCAAAATC
CAAATGAAGGACGTGGGGCCTTGGAGACTCGAGCATCTCCGGCTCCAGCTCCAGCCCCTTCAACGTTGGATTTGATGCAT
TTGTGTCAGGAGGGAAAGGTTAAGGATGCTATAGAGTTGATGGATAAAGGGGTTAAAGCTGATGCTGATTGTTTTTATGC
TTTGTTCGAGTTGTGCAGCAAATTTGAGGATGCCAAAAAAGTACATGATTACTTTTTGCAATCAACATATAGAGGTGATC
TCAAGTTTAACAATAAGGTGATTGAAATGTATGGAAAATGTGCAAGTATGACTGATGCTAGGAGAGTTTTTGATCATATG
CCGGATAGGAATATGGATTCATGGCATCTGATGATAAACGGGTATGCAAATAATAATCTGGGAGATGAAGGGTTGCAATT
GTTTGAGCAGATGAGGAAATTGGGGTTGAAGCCTACTGAGGATACGTTCCTTGCAGTTTTGTCTGCATGTGCCAGTGCAG
ATGCAGTGGAGGAAGGATAATTACATTTTGAGTCAATGAAGAATGAGTATGGAATTAATCCAGGGATGCAACATTATTTG
GGGGTTATAGATATTCTTGGAAAGTCTGGCTATGTTAATGAAATTGAAGAGTACATTGAGAAACTGCCATTTGCGCCCAC
AGTGGAAATCTGGGATGCATTCAGGAATTATGCTCGAATTCATGGAGATATTGATCTTGAAGACCGTGCTGAGGAGTTGA
TGGTTGCTCTTGACCCATCAAAGTCTGTTGCTAACAAGATCCCTACACCGCTGCCAAAGAAATATTCTGCAATCAGCATG
CTTGAAGGAAAGAATAGAATTCCTGAGTTTCGGAATCCTACCCTTTACAAAGATGATGAGAAATTGAAGGCAATGAGTAA
GGCTGTGAGTTATGTGCCAGATACTAGATATGTTCTTCATGACATTGATCAAGAAGCCAAGGAGCAAGCCCTGTTATATC
ACAGTGAGCGTTTGGCAATTGCATATGGTCTCATCAGTACGCCTGCAAGAACACCCTTGAGGATCATTAAGAACCTTCGT
GTGTGTGGTGATTGTCACAATGCTATCAAGATCATGTCCAGGATTGTTGGGAGGGAATTGATTGTTAGGGATAACAAAAG
ATTTCATCATTTCAAGGATGGCAGTTGCTCTTGTGGAGATTACTGGTGAAGTTATCAACTCAAAACTCTTCTTATGTTGC
CATTATCTCTTCAAGGAGAAGTTTTGATTTGTAAAGTGCCATATCTTCTGAACCATGTCTGCTTATGTGGATGGTTAAAC
TAGCACATCTAGTATCTGAACTTTTTACTGCTTAACTTGTATGGCCTAGTTGTTTTAATGATCAGTTAATTATTTGTTAT
GAGATTTCCCTGTGATT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002285135.1| PREDICTED: hypothetical protein [Vitis vinifera] 671 0.0
  Manihot esculenta blastn  cassava4.1_028274m|PACid:17989872 1552 0.0
  FGENESH CDS blastn  scaffold04795_FGENESH1 4 exon (s) 2832 - 4383 1287 bp, chain + 1074 0.0
  Arabidopsis thaliana blastx  AT2G15690.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6831855-6833594 REVERSE LENGTH=579 532 1e-151
  Populus trichocarpa blastx  POPTR_0014s11190.2|PACid:18223589 353 3e-97
  Vitis vinifera blastx  GSVIVT01009619001|PACid:17821993 298 7e-81
  Ricinus communis blastx  29801.m003193|PACid:16809043 629 1e-180
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig05827_1_ORF2  Length: 295 aa
InterPro
IPR002885
Repeat
Pentatricopeptide repeat
PF01535[242-276]T 5e-09 PF01535 PPRPPR
TIGR00756[242-276]T 1.3e-07 TIGR00756 PPR: pentatricopeptide repeat domainPPR: pentatricopeptide repeat domain
noIPR
unintegrated
unintegrated
PTHR10483[157-295]T 4.7e-34 PTHR10483 PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINPENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN
seg[67-77]? NA seg seg[141-150]? NA seg segseg
SSF48452[157-295]T 2e-06 SSF48452 TPR-likeTPR-like
Sequence: Contig05827_1_ORF3  Length: 222 aa
noIPR
unintegrated
unintegrated
PTHR10483[3-222]T 5.6e-70 PTHR10483 PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINPENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN
PTHR10483:SF4[3-222]T 5.6e-70 PTHR10483:SF4 SELENIUM-BINDING PROTEINSELENIUM-BINDING PROTEIN
Sequence: Contig05827_2_ORF2  Length: 96 aa
No hits reported.
Sequence: Contig05827_4_ORF2  Length: 82 aa
No hits reported.
Sequence: Contig05827_4_ORF3  Length: 71 aa
No hits reported.
Sequence: Contig05827_4_ORF4  Length: 74 aa
No hits reported.
Sequence: Contig05827_4_ORF5  Length: 53 aa
No hits reported.
Sequence: Contig05827_4_ORF6  Length: 53 aa
No hits reported.
Sequence: Contig05827_4_ORF7  Length: 123 aa
noIPR
unintegrated
unintegrated
seg[71-83]? NA seg segseg
Sequence: Contig05827_5_ORF2  Length: 66 aa
No hits reported.
Sequence: Contig05827_6_ORF2  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[38-53]? NA seg segseg
Sequence: Contig05827_6_ORF3  Length: 79 aa
No hits reported.