Home > Keyword search > Contig05826

Summary
Sequence ID 
Sequence Length 432 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold02233
Related probe ID of RIKEN ver.1 microarray  R_Mes01_001714 (Scaffold02233)
 
 
Sequence
>Contig05826
CATAGAATACTAGCTAGTAGCTATAGTACTTTTTATCAGTTAAGCAATCCACTTGATATACTAACCCAATGCTGGAGCTT
CTCTTGGCCAGCATGGGAGGTTTAGTGCTCATCACTAGTAATGTGTACATAGAAGCAGCAGCAGCAGAAAATAGAAGTGG
CAAAGTCGGAGAAAAGGACAATAAAATAAAGGATGGGGACTGAATGGCAAATAATAAAAAGTAGTCTTTGTAGTGTAAAA
GAACATTAGTTTGGGTTTTAGAGTGATTATACATAAGTTTTGGGGAAAAATTGTAAATATTATTATCGTTTTTGGTGGGT
TTTTCATGTCTGTACCTTTTGTTTTTTCTTTTTATTTTCTAGGTAGTGGAAGTGGAAAGAAAATGTGTAATGATATGAAA
TGAAAATAAGAGATTGTTGTGTCCGTGTCTGC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx - - -
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx - - -
  Populus trichocarpa blastx - - -
  Vitis vinifera blastx - - -
  Ricinus communis blastx - - -
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig05826_2_ORF2  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[18-29]? NA seg segseg
Sequence: Contig05826_4_ORF2  Length: 78 aa
noIPR
unintegrated
unintegrated
seg[15-22]? NA seg seg[37-47]? NA seg seg[60-74]? NA seg segseg
Sequence: Contig05826_5_ORF2  Length: 114 aa
noIPR
unintegrated
unintegrated
seg[54-71]? NA seg segseg