Sequence ID		Contig05823 AF101231 BM259680 BM259750 BM259768 BM259818 BM259908 BM259969 BM260013 BM260227 CAS01_002_A16.f (DB920421) CAS01_002_A16.r (DB939156) CAS01_006_F05.f (DB921952) CAS01_006_F05.r (DB940518) CAS01_008_O03.f (DB922886) CAS01_008_O03.r (DB941328) CAS01_008_P24.f (DB922930) CAS01_008_P24.r (DB941369) CAS01_010_L24.f (DB923566) CAS01_010_L24.r (DB941951) CAS01_013_K23.f (DB924614) CAS01_013_K23.r (DB942915) CAS01_013_P21.f (DB924730) CAS01_014_D10.f (DB924811) CAS01_014_I21.f (DB924938) CAS01_014_I21.r (DB943201) CAS01_016_G02.r (DB943800) CAS01_019_D22.f (DB926629) CAS01_019_L11.f (DB926792) CAS01_019_L11.r (DB944860) CAS01_022_D19.f (DB927703) CAS01_022_D19.r (DB945673) CAS01_024_C24.f (DB928405) CAS01_026_J04.f (DB929262) CAS01_026_K24.f (DB929304) CAS01_026_K24.r (DB947025) CAS01_026_O19.f (DB929392) CAS01_026_O19.r (DB947104) CAS01_027_G22.f (DB929580) CAS01_027_G22.r (DB947262) CAS01_029_D24.f (DB930235) CAS01_029_F21.f (DB930278) CAS01_029_F21.r (DB947863) CAS01_029_H11.f (DB930313) CAS01_029_L09.f (DB930399) CAS01_029_L09.r (DB947965) CAS01_030_B05.f (DB930528) CAS01_030_E05.f (DB930598) CAS01_030_E05.r (DB948152) CAS01_030_G03.f (DB930643) CAS01_030_G03.r (DB948193) CAS01_031_M06.r (DB948647) CAS01_032_O02.f (DB931566) CAS01_032_O02.r (DB949008) CAS01_034_H10.f (DB932155) CAS01_034_H10.r (DB949542) CAS01_044_N16.f (DB935955) CAS01_044_N16.r (DB952879) CAS01_045_O03.f (DB936333) CAS01_045_O03.r (DB953222) CAS01_045_O21.f (DB936351) CAS01_045_O21.r (DB953237) CAS01_047_B01.f (DB936753) CAS01_048_B11.f (DB937095) CAS01_048_B11.r (DB953920) CAS01_049_D02.f (DB937484) CAS01_049_E02.r (DB954293) CAS01_050_N11.f (DB938073) CAS01_050_N11.r (DB954796) CK640961 CK642725 CK645344 DV440907 DV440927 DV442141 DV442808 DV442835 DV442867 DV443436 DV443808 DV444063 DV444257 DV445150 DV445745 DV445860 DV446689 DV446730 DV446914 DV447856 DV447967 DV448453 DV448538 DV448919 DV449041 DV449849 DV450094 DV450305 DV450424 DV451660 DV451809 DV451945 DV452248 DV452975 DV453182 DV453259 DV453643 DV453813 DV454081 DV454083 DV454572 DV454894 DV455241 DV455990 DV456146 DV456317 DV456444 DV456613 DV456652 DV457177 DV457955 DV458126 DV458152 DV458895 DV458991 DV458993 M95930 M96583
Sequence Length		1163 nucleotides
Gbrowse Mes
Gbrowse Rco		Mapped
Gbrowse Ptr		Mapped
Gbrowse Vvi		Mapped
Gbrowse Ath		-
Transcript scaffold composed of the full-length cDNA(s)		Scaffold04150  Scaffold06982  Scaffold06984  Scaffold06985  Scaffold06986  Scaffold06987  Scaffold06988
Related probe ID of RIKEN ver.1 microarray		- (Scaffold04150)  - (Scaffold06982)  - (Scaffold06984)  - (Scaffold06985)  R_Mes01_005478 (Scaffold06986)  R_Mes01_005479 (Scaffold06987)  R_Mes01_005480 (Scaffold06988)

>Contig05823 NNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTATGAAATTCTAATGAGAATATAATATAATAGAATATAGAAACTTAGAAATTATACATAAACAAATGCACAAGGCAA ACGAGTTTAATATTTGATAGCAACAAATGTTCAACAGTTTTATGAATTCAACCTCGCATCTTGCATCCGTTCAGTCGGAG AAACTCCGATAGGAAAGGAAAAAAGGTACAAGCAAAAAGAGAACATTTCAAAAACATCGATCCTAATTGAACAAAACCCA GAAAGGATAATGTCAACAAATTAAAATTGGGAGAAAATAATTTAAGCGCCAGGAGGCTTGTAGGCAAGGAAACTGATGCA CTGCACTTGGCGAACATTGTCGAAGCCAATGATCCTAGCATAGCCATCTGGGTGATGTTTGATCAGCTCATCAAGCTCCT TCAACACCTGGGCTGCATCTGTGCACCCAAACATGGGCAGCTTCCACATGGTCCAGTAGCGACCATCGTAGTACCCTGGT ACTCTTGCATGCTCACGGTACACCAATCCATGCTCTAGCTCGAATTCCAAGCAAGGAATCCATCCAGAACGAAGAAGGTA TTCAACTTCGCTGGCCAATTGCTCCCTTGTAAGTGGTGGAAGGTATGAGAGAGTCTCGAACTTCTTCATCCCAAGTGTTG GCCAAACCTTCATGCATTGGACCTTGCCACCGTTGCTGGTGATGGAGGTGATGTCAGAGTTGGTTTTGCGGGTGGTAGGG AAGACTGGGGTGGACTTAAGGCCGGTGAACGGAGCCACCATAGTAGCCTGAGCAGGGCTGACCCTGTTAATGCTAGCCAC AGTAGCAGTTGAGAGCATAGAGGAAGCCATTTTTTTACCTCCCTTTACTTTCTTCTACTTACTATTACTATTTACCAAGG CCAAAACCTTCGAACAGATCAAAAAAAAACATCTTCTGATGATGATCTGGAGCTCACTCTCGCCTGTCCGATTTCTGTTG AAGGGAGTAAAGCTTCCACAAGTCCCTTCTTCGTCTCCATAAGAGCTACTTAGCTTCACTATTAGTGTTAATTATATATT AATTTCCGGTGTAGTTATCATGTGTTAATAGAGGAATTAGTTC

vs DB	Program	Description	Score	E value
NCBI nr	blastx	sp|Q42915.1|RBS_MANES RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor gb|AAA99429.1| ribulose 1,5-bisphosphate carboxylase [Manihot esculenta] gb|AAF06099.1| ribulose 1,5-bisphosphate carboxylase small chain precursor [Manihot esculenta]	378	1e-102
Manihot esculenta	blastn	cassava4.1_017243m|PACid:17990746	1088	0.0
FGENESH CDS	blastn	scaffold10493_FGENESH3 3 exon (s) 25373 - 26217 549 bp, chain -	1088	0.0
Arabidopsis thaliana	blastx	AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15384350-15385155 REVERSE LENGTH=181	284	7e-77
Populus trichocarpa	blastx	POPTR_0005s15660.1|PACid:18208907	280	2e-75
Vitis vinifera	blastx	GSVIVT01008288001|PACid:17820914	240	8e-64
Ricinus communis	blastx	29974.m000232|PACid:16814754	318	4e-87

InterProScan

GO:0009573 Cellular Component chloroplast ribulose bisphosphate carboxylase complex

GO:0015977 Biological Process carbon utilization by fixation of carbon dioxide

GO:0016984 Molecular Function ribulose-bisphosphate carboxylase activity

Sequence: Contig05823_1_ORF2  Length: 69 aa
noIPR unintegrated	unintegrated seg seg

Sequence: Contig05823_2_ORF2  Length: 95 aa

No hits reported.

Sequence: Contig05823_2_ORF3  Length: 67 aa

No hits reported.

Sequence: Contig05823_2_ORF4  Length: 66 aa

No hits reported.

Sequence: Contig05823_3_ORF2  Length: 57 aa

No hits reported.

Sequence: Contig05823_3_ORF3  Length: 99 aa
noIPR unintegrated	unintegrated seg seg

Sequence: Contig05823_3_ORF4  Length: 76 aa
noIPR unintegrated	unintegrated seg seg

Sequence: Contig05823_4_ORF2  Length: 64 aa
noIPR unintegrated	unintegrated seg seg

Sequence: Contig05823_4_ORF3  Length: 84 aa

No hits reported.

Sequence: Contig05823_5_ORF2  Length: 58 aa

No hits reported.

Sequence: Contig05823_5_ORF3  Length: 190 aa
InterPro IPR000894 Domain	Ribulose bisphosphate carboxylase, small chain PD000290 RBS6_FLAPR_Q39748; PR00152 RUBISCOSMALL G3DSA:3.30.190.10 no description PF00101 RuBisCO_small SSF55239 RuBisCO, small subunit