Home > Keyword search > Contig05821

Summary
Sequence ID 
Sequence Length 680 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06980
Related probe ID of RIKEN ver.1 microarray  R_Mes01_005477 (Scaffold06980)
 
 
Sequence
>Contig05821
TACTGATGAGCTGAGTTTAGTAAGCTCAGGTGCGGATGCTTGTGTTCGTGTTTGGAGATAAAGCCCACAGTGATGCTGCT
TGATGATGATCATCATGAAGATACTAGGTTAAAAAACTATCAAAGTTTGGTGTGTGCACTGGATTATTTTTGGACTTCTG
CATTGTTGTCAAGTTGGGTGTTATTTTAGGTTGGAGATAGTCACGAAGATTAAACTGCCCTTTGTTGTAATCAAATCATG
TTTTAGTGACCGTCTACAAACAGCAGTAGGGAAATGCCTGTAATATTTTGTATTTTATGTGCTTGTCTTCATCCGATGGG
AGTTCACTGGAATTTCGTGCCGGTTTTCCATCAGACGAGAAGGGATTAAGCTGTAAAGGATACTAGTATGCAGCAAATGA
GCAGAGACAGAAAATGGTTGAAGTGGTGAGGTGAGTTACCTTTTCGGTTGTGAGAGGATTGTTGACACTAGCATATTGCT
CCATTTTTTTTAGTGGGTGAGTGGTGATGGTGCTAGTAAATGTTGTGATATTAGTTATTTTCCTTGATAGCTATAGTGCG
GGAGTGATGAGTGTTATCTCTATGTATTTTAGTTGTTTTGTGTAGCTGTTGTTGTGTTTTTTCTGTCTACACTTTTTTTT
TCGTCATCATCTTAATCTTCTGTCATTGAATTTGTTTGCC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx - - -
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx - - -
  Populus trichocarpa blastx - - -
  Vitis vinifera blastx - - -
  Ricinus communis blastx - - -
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig05821_1_ORF2  Length: 59 aa
No hits reported.
Sequence: Contig05821_2_ORF2  Length: 56 aa
No hits reported.
Sequence: Contig05821_5_ORF2  Length: 55 aa
noIPR
unintegrated
unintegrated
seg[5-17]? NA seg segseg