Home > Keyword search > Contig05820

Summary
Sequence ID 
Sequence Length 624 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06978
 Scaffold06979
Related probe ID of RIKEN ver.1 microarray  R_Mes01_005475 (Scaffold06978)
 R_Mes01_005476 (Scaffold06979)
 
 
Sequence
>Contig05820
GAACGTAGTTTGGTGTCTGGAGGAGGAGAAAAACAAAGGGATAGAGATTAGAGAGCGCTTTGTACATAATCTTCTTCTTG
CTTCTTGCTTCTTGCTTCTTGTTTGTTTTTTCTTGTTGTTGTATAGAACAGTGGTTACTCGTATAAGCCGCCGCCTATGG
CCACAAGAGGGTTGGTATTGTATTTGCTGTCGGGTTTTTCTGTGGCTGTTCTCTCTACAATCATCTTCGTCGATAAAAAT
GCCGGAGACCCCTCAAACAACATCTTACTCAGTTCTCCTCACATGTCCACAACCGAAAAAGTTTGGCCAAAATTGGAGCT
TAGTTGGAGACTAGCGTTGGCTACGGTGATAGGATTTCTGGGATCGGCATGTGGAACTGTAGGCGGCGTTGGTGGCGGAG
GCATTTTCGTGCCTATGCTTACTTTGATTGTTGGATTTGATACCAAGTCTGCTGCTGCCATCTCCAAATGTATGATCATG
GGGGCATCAGCTTCATCAGTTTGGTACAATTTAAGAGTGCCTCATCCAACAAAGGAAGTGCCCATTATAGACTATGATTT
AGCTCTTCTCTTTCAGCCCATGCTTATGCTTGGCATCACCATTGGTGTTGCCTTGAGTGTTGTC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002326235.1| predicted protein [Populus trichocarpa] >gi|... 250 1e-64 >ref|XP_002326235.1| predicted protein [Populus trichocarpa] gb|EEE71905.1| predicted protein [Populus trichocarpa] 250 1e-64
  Manihot esculenta blastn  cassava4.1_007299m|PACid:17975524 912 0.0
  FGENESH CDS blastn  scaffold10247_FGENESH1 12 exon (s) 2333 - 4965 1377 bp, chain + 912 0.0
  Arabidopsis thaliana blastx  AT2G36630.1 | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:15352767-15355050 REVERSE LENGTH=459 223 8e-59
  Populus trichocarpa blastx  POPTR_0006s11920.1|PACid:18213888 250 7e-67
  Vitis vinifera blastx  GSVIVT01033741001|PACid:17839399 241 2e-64
  Ricinus communis blastx  29815.m000496|PACid:16809552 248 1e-66
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig05820_1_ORF2  Length: 166 aa
noIPR
unintegrated
unintegrated
seg[83-92]? NA seg segseg
Sequence: Contig05820_2_ORF1  Length: 110 aa
noIPR
unintegrated
unintegrated
seg[24-40]? NA seg seg[66-77]? NA seg segseg
Sequence: Contig05820_4_ORF2  Length: 51 aa
noIPR
unintegrated
unintegrated
seg[28-39]? NA seg segseg
Sequence: Contig05820_4_ORF3  Length: 84 aa
noIPR
unintegrated
unintegrated
seg[66-79]? NA seg segseg
Sequence: Contig05820_5_ORF2  Length: 51 aa
No hits reported.
Sequence: Contig05820_6_ORF2  Length: 80 aa
noIPR
unintegrated
unintegrated
seg[41-50]? NA seg segseg