Summary
| Sequence ID | ||
| Sequence Length | 526 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | Mapped | |
| Gbrowse Ptr | Mapped | |
| Gbrowse Vvi | Mapped | |
| Gbrowse Ath | Mapped | |
| Transcript scaffold composed of the full-length cDNA(s) | Scaffold06804 | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_005344 (Scaffold06804) |
| >Contig05685 ACTTCAAGCACAAACATTCCATTGCAATAATATTCTAACAAGGGATTATTTGTCTTTCCGAATGGAGCATAAGGAACATG AAGAATTTGAGGTTTCCATTCCAAAATTAGGAAAAAAAAAGGGTCCAGTAAACAAGGATTAATTAGAGGTAAGAAAAAAA CCAAATTTAAATAGAACACAAGAAGAAGCATTACATTTAAGGGCACGAGTGATTGCTATAAATATCTACCGTCAACCTCA TGCAGAACAACCAAAAGTCTAAAACCTAGACATGGGCAGTGCCCTCGGTGAACTTGGGGTCTTCACATCTGTACCGCCCA TCAGGTCCAATCCCAAAGCCTTTTGGATCCGCGAAAACATTCTCTAGTAACTGGCTACGGGGTGGATGAGGGCTCTCATC TGCAAACTCAACACAATCCTCAACCACTTCATCTATCTTCTTCTCAATGGCCTTCAACTCTGCTTCACTGACTAGCCCTT TCTCAATCATATATTTCTTCAAGGATGTTATGGGATCTCTAGCAGC |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | ref|XP_002515074.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF47058.1| pyruvate dehydrogenase, putative [Ricinus communis] | 162 | 2e-38 |
| Manihot esculenta | blastn | cassava4.1_007973m|PACid:17975763 | 509 | 1e-144 |
| FGENESH CDS | blastn | scaffold03581_FGENESH19 3 exon (s) 162089 - 164446 1305 bp, chain - | 509 | 1e-144 |
| Arabidopsis thaliana | blastx | AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428 | 147 | 4e-36 |
| Populus trichocarpa | blastx | POPTR_0002s18020.1|PACid:18244467 | 159 | 2e-39 |
| Vitis vinifera | blastx | GSVIVT01027439001|PACid:17834819 | 152 | 9e-38 |
| Ricinus communis | blastx | 30076.m004445|PACid:16817058 | 162 | 8e-41 |
| InterProScan |
| GO:0008152
Biological Process metabolic process |
| Sequence: Contig05685_1_ORF2 Length: 59 aa | |
| No hits reported. | |
| Sequence: Contig05685_5_ORF1 Length: 86 aa | |||||||||||||||||||
| InterPro IPR001017 Domain |
| ||||||||||||||||||
| noIPR unintegrated |
| ||||||||||||||||||
![[1-51]T 2.1e-14 PF00676 E1_dh](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
![[24-45]? NA coil coiled-coil](http://pmix.psc.riken.jp/img/interpro/G.gif){kind=small}
![[2-60]T 4.4e-09 G3DSA:3.40.50.970 no description](http://pmix.psc.riken.jp/img/interpro/X2.gif){kind=small}
![[1-78]T 2.5e-26 PTHR11516 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)](http://pmix.psc.riken.jp/img/interpro/X4.gif){kind=small}
![[3-61]T 2.4e-11 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)](http://pmix.psc.riken.jp/img/interpro/B.gif){kind=small}
| Sequence: Contig05685_6_ORF2 Length: 60 aa | |||||||
| noIPR unintegrated |
| ||||||
