Sequence ID | ||
Sequence Length | 641 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold06804 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_005344 (Scaffold06804) |
>Contig05684 GGTGTGCAGTTGAGAGTTGGGTGGCTTTCTAACATTAGTTTCATTTTCAATCGGGCGGTTACTTCCACGCCCTCTTCCCT TGTTTCCTCCGCCCCTCTTTCTCCTCTTATAGTCTTTTTCTTTCTTCCCCTTTCTCTCACTTTTCTTCTCTCCCATTTGC TTTCTCTGCTGTTTCTTACGAAGAGAAAGCACAATGGCTTCTGCTTTCTCTGCCACCAAGTTCACTCAGCCTTTGCCTCT CAATACTACCACTCCCAGATCTCACGAAAACCTCTCTGTTTTCGATCCTCTCAAAAGCACTACTTTTCTGGGATCTACTC GCAAACTTCGCTTCACTTCTTTTTCCAAATTGAATCGACTCAATTCCCACCGTCCATCACCTGTTGTTGCCGTTTCTGAA GCCGTTAAGGAAAAGAAGCTCAAATCAAAATCCAATCTGTTGATCACAAAAGAAGAAAGCTTGGAGCTATATGAGGATAT GGTGTTGGGCAGAGCCTTTGAGGACATGTGTGCCCAGATGTATTACAGGGGAAAAATGTTTGGTTTTGTTCATCTCTATA ATGGTCAGGAGGCTGTGTCAACTGGATTCATCAAGCTGTTGAAGGAGCAGGATTATGTTGTCAGCACTTATCGTGATCAC G |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | gb|ABK95003.1| unknown [Populus trichocarpa] | 215 | 3e-54 |
Manihot esculenta | blastn | cassava4.1_007973m|PACid:17975763 | 880 | 0.0 |
FGENESH CDS | blastn | scaffold03581_FGENESH19 3 exon (s) 162089 - 164446 1305 bp, chain - | 880 | 0.0 |
Arabidopsis thaliana | blastx | AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428 | 177 | 7e-45 |
Populus trichocarpa | blastx | POPTR_0002s18020.1|PACid:18244467 | 215 | 2e-56 |
Vitis vinifera | blastx | GSVIVT01027439001|PACid:17834819 | 191 | 2e-49 |
Ricinus communis | blastx | 30076.m004445|PACid:16817058 | 214 | 3e-56 |
InterProScan |
GO:0008152
Biological Process metabolic process |
Sequence: Contig05684_1_ORF1 Length: 132 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig05684_2_ORF2 Length: 176 aa | |||||||||||||||||||
InterPro IPR001017 Domain |
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noIPR unintegrated |
|
Sequence: Contig05684_3_ORF2 Length: 104 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig05684_3_ORF3 Length: 52 aa | |
No hits reported. |
Sequence: Contig05684_4_ORF1 Length: 86 aa | |
No hits reported. |
Sequence: Contig05684_4_ORF2 Length: 75 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig05684_5_ORF2 Length: 66 aa | |
No hits reported. |
Sequence: Contig05684_6_ORF2 Length: 60 aa | |||||||
noIPR unintegrated |
|