Home > Keyword search > Contig05684

Summary
Sequence ID 
Sequence Length 641 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06804
Related probe ID of RIKEN ver.1 microarray  R_Mes01_005344 (Scaffold06804)
 
 
Sequence
>Contig05684
GGTGTGCAGTTGAGAGTTGGGTGGCTTTCTAACATTAGTTTCATTTTCAATCGGGCGGTTACTTCCACGCCCTCTTCCCT
TGTTTCCTCCGCCCCTCTTTCTCCTCTTATAGTCTTTTTCTTTCTTCCCCTTTCTCTCACTTTTCTTCTCTCCCATTTGC
TTTCTCTGCTGTTTCTTACGAAGAGAAAGCACAATGGCTTCTGCTTTCTCTGCCACCAAGTTCACTCAGCCTTTGCCTCT
CAATACTACCACTCCCAGATCTCACGAAAACCTCTCTGTTTTCGATCCTCTCAAAAGCACTACTTTTCTGGGATCTACTC
GCAAACTTCGCTTCACTTCTTTTTCCAAATTGAATCGACTCAATTCCCACCGTCCATCACCTGTTGTTGCCGTTTCTGAA
GCCGTTAAGGAAAAGAAGCTCAAATCAAAATCCAATCTGTTGATCACAAAAGAAGAAAGCTTGGAGCTATATGAGGATAT
GGTGTTGGGCAGAGCCTTTGAGGACATGTGTGCCCAGATGTATTACAGGGGAAAAATGTTTGGTTTTGTTCATCTCTATA
ATGGTCAGGAGGCTGTGTCAACTGGATTCATCAAGCTGTTGAAGGAGCAGGATTATGTTGTCAGCACTTATCGTGATCAC
G

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  gb|ABK95003.1| unknown [Populus trichocarpa] 215 3e-54
  Manihot esculenta blastn  cassava4.1_007973m|PACid:17975763 880 0.0
  FGENESH CDS blastn  scaffold03581_FGENESH19 3 exon (s) 162089 - 164446 1305 bp, chain - 880 0.0
  Arabidopsis thaliana blastx  AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428 177 7e-45
  Populus trichocarpa blastx  POPTR_0002s18020.1|PACid:18244467 215 2e-56
  Vitis vinifera blastx  GSVIVT01027439001|PACid:17834819 191 2e-49
  Ricinus communis blastx  30076.m004445|PACid:16817058 214 3e-56
 
 
Gene Ontology 
InterProScan
GO:0008152
Biological Process
metabolic process
 
 
InterProScan result 
Sequence: Contig05684_1_ORF1  Length: 132 aa
noIPR
unintegrated
unintegrated
seg[19-36]? NA seg seg[39-59]? NA seg segseg
Sequence: Contig05684_2_ORF2  Length: 176 aa
InterPro
IPR001017
Domain
Dehydrogenase, E1 component
PF00676[121-176]T 2.5e-23 PF00676 E1_dhE1_dh
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970[111-176]T 2.8e-16 G3DSA:3.40.50.970 no descriptionno description
PTHR11516[106-176]T 7.4e-45 PTHR11516 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)
PTHR11516:SF5[106-176]T 7.4e-45 PTHR11516:SF5 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNITPYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT
seg[1-22]? NA seg seg[88-107]? NA seg segseg
SSF52518[111-176]T 1.3e-15 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig05684_3_ORF2  Length: 104 aa
noIPR
unintegrated
unintegrated
seg[16-43]? NA seg seg[54-75]? NA seg segseg
Sequence: Contig05684_3_ORF3  Length: 52 aa
No hits reported.
Sequence: Contig05684_4_ORF1  Length: 86 aa
No hits reported.
Sequence: Contig05684_4_ORF2  Length: 75 aa
noIPR
unintegrated
unintegrated
seg[25-57]? NA seg segseg
Sequence: Contig05684_5_ORF2  Length: 66 aa
No hits reported.
Sequence: Contig05684_6_ORF2  Length: 60 aa
noIPR
unintegrated
unintegrated
seg[22-36]? NA seg seg[39-57]? NA seg segseg