Home > Keyword search > Contig05516

Summary
Sequence ID 
Sequence Length 883 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06595
Related probe ID of RIKEN ver.1 microarray  R_Mes01_005177 (Scaffold06595)
 
 
Sequence
>Contig05516
GGGTTGTGGCTGCTCTTTTCTTCAAGCTTTAAGGATAGTAAAGTTGCTGATTTCATCTTCTGGCTACACCAATTACAATG
AAAACTGAGGGAAAGGCCTCTAAACTCAAGCTTAAGCTCTCTCTCCCTCCTCCTCCTCCTCATGGAGTTTCCTTCGCTGA
GTCCTAACCCCTAGCGGTACATTTCTCGATGGGGATCTGAGAGTGAATCGCGATGGAATTCGAATTGTCTCCCAAAGCGA
AACCGAAGCTGCGCCCCTTATTAGGCCATCAGATCAACAGTTGGCTTTGGCTGACTTAGAAACCATTAAGGTCCTTGGAA
AGGGCAACGGTGGAATTGTGCAGCTGGTTCAACATAAGTGGACTCAGCAGTTGTTTGCATTAAAGGTTATGGAGCTGAAG
ATTGAGGAGAGCGCAAGGAAATTAATTGCTAGGGAATTAAGAATCAATTTAACCTCACAATGTCCAAACGTGGTCATGTT
TTACGAGTCTTTCTACGACAATGGCAAAATTTCGATTGGCTTGGAGTATATNGGATGGTGGATCTTTGGCTGATCTTCTC
AACAAAGTTAAAAAAATTGCAGAACCATATCTTGCTTGGCCAATCTGTAAACAGGTACTCCAGGGTTTATTGTATCTTCA
TCATGAAAAACATATCATTCATAGGGACCTGAAACCTTTGTAACATACTGATAAATCATGAAGGAGAAGTCAAGATTGCT
GACTTTGGTGTAAGTGCAATAATGGCAAGCACTTCTGGACATGCAAATACTTACGTTGGTACATACCACTATATGTCTCC
TGAAGGGATTAGCAGTGAAGTTAGTGGAGGAGAGCACAACTACAGAAGTGACATTTGGAGCCTGGGTATAGTAATGCTGC
AGT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002308276.1| predicted protein [Populus trichocarpa] >gi|... 172 4e-84 >ref|XP_002308276.1| predicted protein [Populus trichocarpa] gb|EEE91799.1| predicted protein [Populus trichocarpa] 172 4e-84
  Manihot esculenta blastn  cassava4.1_010246m|PACid:17986592 1467 0.0
  FGENESH CDS blastn  scaffold09809_FGENESH24 9 exon (s) 552716 - 555401 1143 bp, chain + 1322 0.0
  Arabidopsis thaliana blastx  AT4G29810.1 | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase 2 | chr4:14593299-14595241 REVERSE LENGTH=363 167 1e-75
  Populus trichocarpa blastx  POPTR_0006s14850.1|PACid:18211787 172 2e-86
  Vitis vinifera blastx  GSVIVT01015283001|PACid:17826070 136 3e-67
  Ricinus communis blastx  29912.m005307|PACid:16813186 177 5e-86
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
detail
Sequence: Contig05516_1_ORF2  Length: 79 aa
No hits reported.
Sequence: Contig05516_1_ORF3  Length: 70 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[4-70]T 4e-22 PD000001 Q6QMT5_PETCR_Q6QMT5;Q6QMT5_PETCR_Q6QMT5;
PS50011[1-70]T 18.718 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[4-70]T 2.6e-18 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[4-68]T 4.7e-19 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[4-69]T 6.6e-16 G3DSA:1.10.510.10 no descriptionno description
PTHR22986[4-69]T 4e-33 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF39[4-69]T 4e-33 PTHR22986:SF39 MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2
Sequence: Contig05516_2_ORF2  Length: 130 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[47-123]T 2e-25 PD000001 O48616_LYCES_O48616;O48616_LYCES_O48616;
PS50011[46-130]T 11.256 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[32-125]T 3.1e-16 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017441
Conserved_site
Protein kinase ATP binding, conserved site
PS00107[52-75]T 8e-5 PS00107 PROTEIN_KINASE_ATPPROTEIN_KINASE_ATP
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[46-123]T 7.2e-13 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:3.30.200.20[29-124]T 3.9e-20 G3DSA:3.30.200.20 no descriptionno description
PTHR22986[34-123]T 4.3e-45 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF39[34-123]T 4.3e-45 PTHR22986:SF39 MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2
Sequence: Contig05516_3_ORF2  Length: 76 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[9-75]T 8e-15 PD000001 Q6TKQ8_VITAE_Q6TKQ8;Q6TKQ8_VITAE_Q6TKQ8;
PS50011[1-76]T 13.164 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-75]T 4.9e-11 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[28-75]T 4.3e-08 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[29-75]T 5.7e-10 G3DSA:1.10.510.10 no descriptionno description
PTHR22986[28-75]T 3e-21 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF39[28-75]T 3e-21 PTHR22986:SF39 MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2
Sequence: Contig05516_4_ORF1  Length: 75 aa
noIPR
unintegrated
unintegrated
seg[11-20]? NA seg segseg
Sequence: Contig05516_4_ORF2  Length: 53 aa
noIPR
unintegrated
unintegrated
seg[45-51]? NA seg segseg
Sequence: Contig05516_5_ORF2  Length: 60 aa
No hits reported.
Sequence: Contig05516_6_ORF2  Length: 50 aa
No hits reported.