Home > Keyword search > Contig04787

Summary
Sequence ID 
Sequence Length 1696 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold05802
 Scaffold05803
 Scaffold05804
Related probe ID of RIKEN ver.1 microarray  R_Mes01_004536 (Scaffold05802)
 - (Scaffold05803)
 - (Scaffold05804)
 
 
Sequence
>Contig04787
GGCCTCTTTTTCTCCTCTTATACTCTCCTTTCTTTCCTCCTCTTTCCCTCACTTTCCCTGTTTTTCACTTTGCTTTCTCA
GCTCCTCTTACTAAGAGAAAGCGCAATGGCTTCTGCTTTCTCTGCTACCAAGTTCACCCCTTTCAATCCCACCACCCCCA
GATCTCACCACAAACAACCTCTTTTCGATCCTCTCAAAACCACCAGTTCTTTTCCGGGATCTACTCGAAAACTTCGTTTC
ACTACTTTTCCCACATTGAATCTACTCAATTCTCACCGTCGATCACCTGTTGTTGCAGTTTCCGAAGCCATTGAAGAAAA
GAAGCTCAAATTGACCTCCAATCTGTTGATCACAAAAGAAGAAGGCTTAGAACTATATGAGGATATGGTGTTGGGCAGAG
CCTTTGAGGACATGTGTGCCCAGATGTATTACAGGGGGAAAATGTTTGGCTTTGTTCATCTCTATAATGGTCAAGAGGCT
GTCTCAACTGGGTTCATCAAGCTGTTGAAGAAGGAAGATTATGTTGTCAGCACTTATCGGGATCACGTCCATGCATTGAG
CAAGGGTGTCTCTGCTCGTGCTGTAATGAGTGAGCTCTTTGGCAAGACCACTGGGTGTTGTCGTGGCCAAGGTGGATCCA
TGCACATGTTTTCGAAAGAGCACAATGTGCTTGGTGGATTTGCATTTATTGGCGAGGGAATTCCAGTGGCAACTGGTGCA
GCTTTTACCTCTAAATATAAGAGAGCGGTTTTGAAGGAGACAGATAGTGAGGATGTGACACTGGCATTTTTTGGAGATGG
AACATGTAATAATGGACAATTCTTTGAGTGTCTGAACATGGCGGCACTGTGGAAATTGCCCATTGTGTTTGTTGTGGAGA
ATAATTTGTGGGCAATTGGAATGTCACACCTGAGGGCAACTTCAGATCCTGAGATTTGGAAGAAGGGCCCAGCATTTGGT
ATGCCAGGTGTTCATGTCGATGGAATGGATGTTTTGAAAGTAAGGGAGGTGGCCAAGGAAGCAATTGGAAGGGCCAGGAT
GGGAGAAGGACCAACTCTGGTGGAATGTGAGACTTACAGGTTTAGAGGACACTCATTAGCTGATCCTGATGAGCTTCGTG
ACCCTGCCGAGAAGGCTCACTATGCTGCTAGAGATCCCGTCACATCCTTGAAGAAGTACATTATTGAGAACAACCTAGCC
AGTGAAGTAGAGTTGAAAGCCATTGAGAAGAAGATAGATGAAGTGGTTGAGGATGCTGTTGAATTTGCAGATGAGAGCCC
TCATCCACCTCGCAGCCAGCTACTTGAGAATGTATTTGCAGATCCAAAAGGCTTTGGAATTGGACCTGATGGGCGGTATC
GATGCGAGGATCCCAAATTCACCCAAGGGACTGCTCATGTCTAAGTTTTTAGAGTTGGGGACGTTAATTAATTACTTCTT
GGTCTGCATGAGGTTTATAATTATACTAGAATTTGTTAGTAATCCACTTGTTCCCTTAAATGTAATGCTGTGTCTTGTAT
AAGCAGGATTTCTAGTTTAGCTTGCTTTGTACTTAAGTTTTTGGTTTTGTTTTGCTAATCATCCTTTTGTTTATTGGACT
ATTGTTTGGAATGGAAACCACAAATGGTTCACGTTCCTTGCACCCCCTTGGAAAAAAAAGGAAAACAATAATCTTATGTA
GAATATTTTATAATAG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002515074.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF47058.1| pyruvate dehydrogenase, putative [Ricinus communis] 772 0.0
  Manihot esculenta blastn  cassava4.1_008040m|PACid:17963786 2575 0.0
  FGENESH CDS blastn  scaffold07571_FGENESH10 3 exon (s) 69747 - 72173 1299 bp, chain + 2575 0.0
  Arabidopsis thaliana blastx  AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428 691 0.0
  Populus trichocarpa blastx  POPTR_0002s18020.1|PACid:18244467 751 0.0
  Vitis vinifera blastx  GSVIVT01027439001|PACid:17834819 725 0.0
  Ricinus communis blastx  30076.m004445|PACid:16817058 772 0.0
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig04787_1_ORF1  Length: 467 aa
InterPro
IPR001017
Domain
Dehydrogenase, E1 component
PF00676[127-432]T 3.8e-139 PF00676 E1_dhE1_dh
InterPro
IPR017597
Family
Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y
TIGR03182[119-440]T 2.1e-210 TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (PDH_E1_alph_y: pyruvate dehydrogenase (
noIPR
unintegrated
unintegrated
coil[405-426]? NA coil coiled-coilcoiled-coil
G3DSA:3.40.50.970[117-441]T 8.5e-117 G3DSA:3.40.50.970 no descriptionno description
PTHR11516[112-459]T 1.7e-225 PTHR11516 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)
PTHR11516:SF5[112-459]T 1.7e-225 PTHR11516:SF5 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNITPYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT
seg[2-31]? NA seg seg[413-425]? NA seg segseg
SSF52518[77-441]T 8e-105 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig04787_2_ORF2  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[6-22]? NA seg segseg
Sequence: Contig04787_2_ORF3  Length: 54 aa
No hits reported.
Sequence: Contig04787_2_ORF4  Length: 94 aa
No hits reported.
Sequence: Contig04787_3_ORF1  Length: 103 aa
noIPR
unintegrated
unintegrated
seg[1-21]? NA seg segseg
Sequence: Contig04787_4_ORF2  Length: 56 aa
No hits reported.
Sequence: Contig04787_4_ORF3  Length: 139 aa
No hits reported.
Sequence: Contig04787_4_ORF4  Length: 56 aa
noIPR
unintegrated
unintegrated
seg[33-51]? NA seg segseg
Sequence: Contig04787_5_ORF2  Length: 65 aa
noIPR
unintegrated
unintegrated
seg[36-48]? NA seg segseg
Sequence: Contig04787_5_ORF3  Length: 116 aa
noIPR
unintegrated
unintegrated
seg[12-29]? NA seg segseg
Sequence: Contig04787_5_ORF4  Length: 52 aa
No hits reported.
Sequence: Contig04787_6_ORF2  Length: 142 aa
No hits reported.
Sequence: Contig04787_6_ORF3  Length: 51 aa
No hits reported.