Sequence ID | ||
Sequence Length | 1696 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | Mapped | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold05802 Scaffold05803 Scaffold05804 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_004536 (Scaffold05802) - (Scaffold05803) - (Scaffold05804) |
>Contig04787 GGCCTCTTTTTCTCCTCTTATACTCTCCTTTCTTTCCTCCTCTTTCCCTCACTTTCCCTGTTTTTCACTTTGCTTTCTCA GCTCCTCTTACTAAGAGAAAGCGCAATGGCTTCTGCTTTCTCTGCTACCAAGTTCACCCCTTTCAATCCCACCACCCCCA GATCTCACCACAAACAACCTCTTTTCGATCCTCTCAAAACCACCAGTTCTTTTCCGGGATCTACTCGAAAACTTCGTTTC ACTACTTTTCCCACATTGAATCTACTCAATTCTCACCGTCGATCACCTGTTGTTGCAGTTTCCGAAGCCATTGAAGAAAA GAAGCTCAAATTGACCTCCAATCTGTTGATCACAAAAGAAGAAGGCTTAGAACTATATGAGGATATGGTGTTGGGCAGAG CCTTTGAGGACATGTGTGCCCAGATGTATTACAGGGGGAAAATGTTTGGCTTTGTTCATCTCTATAATGGTCAAGAGGCT GTCTCAACTGGGTTCATCAAGCTGTTGAAGAAGGAAGATTATGTTGTCAGCACTTATCGGGATCACGTCCATGCATTGAG CAAGGGTGTCTCTGCTCGTGCTGTAATGAGTGAGCTCTTTGGCAAGACCACTGGGTGTTGTCGTGGCCAAGGTGGATCCA TGCACATGTTTTCGAAAGAGCACAATGTGCTTGGTGGATTTGCATTTATTGGCGAGGGAATTCCAGTGGCAACTGGTGCA GCTTTTACCTCTAAATATAAGAGAGCGGTTTTGAAGGAGACAGATAGTGAGGATGTGACACTGGCATTTTTTGGAGATGG AACATGTAATAATGGACAATTCTTTGAGTGTCTGAACATGGCGGCACTGTGGAAATTGCCCATTGTGTTTGTTGTGGAGA ATAATTTGTGGGCAATTGGAATGTCACACCTGAGGGCAACTTCAGATCCTGAGATTTGGAAGAAGGGCCCAGCATTTGGT ATGCCAGGTGTTCATGTCGATGGAATGGATGTTTTGAAAGTAAGGGAGGTGGCCAAGGAAGCAATTGGAAGGGCCAGGAT GGGAGAAGGACCAACTCTGGTGGAATGTGAGACTTACAGGTTTAGAGGACACTCATTAGCTGATCCTGATGAGCTTCGTG ACCCTGCCGAGAAGGCTCACTATGCTGCTAGAGATCCCGTCACATCCTTGAAGAAGTACATTATTGAGAACAACCTAGCC AGTGAAGTAGAGTTGAAAGCCATTGAGAAGAAGATAGATGAAGTGGTTGAGGATGCTGTTGAATTTGCAGATGAGAGCCC TCATCCACCTCGCAGCCAGCTACTTGAGAATGTATTTGCAGATCCAAAAGGCTTTGGAATTGGACCTGATGGGCGGTATC GATGCGAGGATCCCAAATTCACCCAAGGGACTGCTCATGTCTAAGTTTTTAGAGTTGGGGACGTTAATTAATTACTTCTT GGTCTGCATGAGGTTTATAATTATACTAGAATTTGTTAGTAATCCACTTGTTCCCTTAAATGTAATGCTGTGTCTTGTAT AAGCAGGATTTCTAGTTTAGCTTGCTTTGTACTTAAGTTTTTGGTTTTGTTTTGCTAATCATCCTTTTGTTTATTGGACT ATTGTTTGGAATGGAAACCACAAATGGTTCACGTTCCTTGCACCCCCTTGGAAAAAAAAGGAAAACAATAATCTTATGTA GAATATTTTATAATAG |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002515074.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF47058.1| pyruvate dehydrogenase, putative [Ricinus communis] | 772 | 0.0 |
Manihot esculenta | blastn | cassava4.1_008040m|PACid:17963786 | 2575 | 0.0 |
FGENESH CDS | blastn | scaffold07571_FGENESH10 3 exon (s) 69747 - 72173 1299 bp, chain + | 2575 | 0.0 |
Arabidopsis thaliana | blastx | AT1G01090.1 | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428 | 691 | 0.0 |
Populus trichocarpa | blastx | POPTR_0002s18020.1|PACid:18244467 | 751 | 0.0 |
Vitis vinifera | blastx | GSVIVT01027439001|PACid:17834819 | 725 | 0.0 |
Ricinus communis | blastx | 30076.m004445|PACid:16817058 | 772 | 0.0 |
InterProScan |
No hits found |
Sequence: Contig04787_1_ORF1 Length: 467 aa | ||||||||||||||||||||||
InterPro IPR001017 Domain |
| |||||||||||||||||||||
InterPro IPR017597 Family |
| |||||||||||||||||||||
noIPR unintegrated |
|
Sequence: Contig04787_2_ORF2 Length: 54 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig04787_2_ORF3 Length: 54 aa | |
No hits reported. |
Sequence: Contig04787_2_ORF4 Length: 94 aa | |
No hits reported. |
Sequence: Contig04787_3_ORF1 Length: 103 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig04787_4_ORF2 Length: 56 aa | |
No hits reported. |
Sequence: Contig04787_4_ORF3 Length: 139 aa | |
No hits reported. |
Sequence: Contig04787_4_ORF4 Length: 56 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig04787_5_ORF2 Length: 65 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig04787_5_ORF3 Length: 116 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig04787_5_ORF4 Length: 52 aa | |
No hits reported. |
Sequence: Contig04787_6_ORF2 Length: 142 aa | |
No hits reported. |
Sequence: Contig04787_6_ORF3 Length: 51 aa | |
No hits reported. |