Home > Keyword search > Contig04687

Summary
Sequence ID 
Sequence Length 744 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold01034
 Scaffold05684
Related probe ID of RIKEN ver.1 microarray  - (Scaffold01034)
 R_Mes01_004434 (Scaffold05684)
 
 
Sequence
>Contig04687
GATGTGTGCAATAAAAGAAGTCAGAGTGAAAGAGGATGATCAGACGTCAAAAGAAGCTGCTAAGCAGCTGAACCAGGAAA
TAAACTTGCTTAGTCAGCTTTCACATCCAAACATCGTCCGATATCATGGAAGTGAACTGAGTGAAGAAACACTTTCAGTT
TATTTAGAGTATGTCTCTGGTGGCTCCATTCACAAATTACTTCAAGAATATGGTGCCTTCAAGGAACCTGTCATTCAAAA
TTATACCAGGCAGATCCTTTGTGGGCTTGCTTATTTGCATGGAAGAAATACTGTCCACAGGGATATCAAAGGGGCCAACA
TATTAGTAGATCCTAATGGTGAAATCAAGCTGGCTGACTTTGGCATGGCCAAACATATTACATCCTGTTCTTCAATTCTT
TCATTCAAGGGAAGTCCTTACTGGATGGCACCTGAGGTGGTAATGAATACAAATGGCTATAGTCTTGCAGTGGATATTTG
GAGCTTGGGATGTACAATTCTTGAAATGGCAACATCAAAACCGCCATGGAACCAATATGAAGGGGTGAGCTTTTGAAAAT
TTTGTAACTTATATCACCTTTGTCATGTGCATCTTTAAAGTCTTTTTAGGACCAAAGTCATTTAATCATGTTCGATTTAA
CAGGTAGCTGCAATATTCAAAATTGGAAACAGCAAAGATATGCCTGATATACCTGATCACCTGTCAAATGATGCAAAAGG
TTTTATAAAGTTGTGCTTGCAGCG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002529731.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] gb|EEF32660.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] 395 1e-108
  Manihot esculenta blastn  cassava4.1_005325m|PACid:17973662 995 0.0
  FGENESH CDS blastn  scaffold06948_FGENESH71 12 exon (s) 692141 - 696652 2208 bp, chain - 995 0.0
  Arabidopsis thaliana blastx  AT1G53570.4 | Symbols: MAP3KA | mitogen-activated protein kinase kinase kinase 3 | chr1:19987391-19990733 FORWARD LENGTH=608 367 1e-102
  Populus trichocarpa blastx  POPTR_0005s06330.1|PACid:18208825 383 1e-107
  Vitis vinifera blastx  GSVIVT01026487001|PACid:17834182 373 1e-104
  Ricinus communis blastx  29691.m000286|PACid:16805903 395 1e-111
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: Contig04687_1_ORF2  Length: 63 aa
No hits reported.
Sequence: Contig04687_2_ORF1  Length: 184 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[1-183]T 2e-92 PD000001 Q6RFY3_LYCES_Q6RFY3;Q6RFY3_LYCES_Q6RFY3;
PS50011[1-184]T 40.555 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
SM00219[1-184]T 6.3e-11 SM00219 no descriptionno description
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[1-184]T 3.7e-38 SM00220 no descriptionno description
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-176]T 3.5e-60 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR015748
Domain
Mitogen activated protein kinase kinase kinase 3
PTHR22986:SF64[1-182]T 3.3e-117 PTHR22986:SF64 MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[3-176]T 2.5e-60 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[30-176]T 2.3e-48 G3DSA:1.10.510.10 no descriptionno description
PTHR22986[1-182]T 3.3e-117 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
Sequence: Contig04687_3_ORF2  Length: 52 aa
No hits reported.
Sequence: Contig04687_6_ORF2  Length: 66 aa
No hits reported.