Summary
| Sequence ID | ||
| Sequence Length | 896 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | Mapped | |
| Gbrowse Ptr | Mapped | |
| Gbrowse Vvi | Mapped | |
| Gbrowse Ath | Mapped | |
| Transcript scaffold composed of the full-length cDNA(s) | Scaffold05657 | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_004411 (Scaffold05657) |
| >Contig04662 CACATTACTCGCTTTTAGCGAACTTCATATATAAATTATCATGGCATATGTTTAACATTCTGCAACCTAATTATTCTCAA AAGCAATAAAACAAAATAAAATGCAACTTAATTGGTTGCAGCACAATACAACACCTAATGGCAGAAGATCAAAAGATGTT TATTGCTGCCATAAAATACAATACAACCCCTAATGGCAGACGGATCAAACGATGTTTATTGCTGCCATAATCTGATGAAT GATGAGAAGAAAATAAAATTAAGTCCTTGATATAAGCGGATATCCTTGTATCCCACATCACATTAGCAAGTAGCAGCCTT ATCAATTGATGATCACATGTATCTGACCGTAGCTCCTCCAATGGAAACTACATAAAGAAAACAATTGCACCCCACACCTT TCCAAAGAATCAGTATTCTATACAAAAATGTGGAAACAAAATCAGTCTGGAAGATATGCCCATCCTTGCTAACTTTTATT TGCTTTCATTTTAGGATAACTTTGTTAAGCAAAAAGGATTTTGAGAGTGAGGAGGGTTTGACACCTTCCACATATATTCC ATTATGGAAGCACAGCTCTTACTTCTTTCCTATCTGCTCCAAATGCCTCAGTTCCCAGACCCTTCACATACACATTTGTG AAAAGTTCTGAGGGTTCTGGCATTGGACTTTCCTTGGCTTGAGCAATGGCTTGATCTACTTCTTTTCTTATTTCTTTCTC AAAATCCTTTAGCTCCCTCTCTGTAGCAAGATCATGAGCTAATATCACCTTTCTTATCCTTTCAATTGGGTCGCGTTCCT GTCTAACGCCACTAATCTCATCACGAGTACGGTAGGTACTGCCAGGATCAGACATGGAGTGACCATGATACCTGTAGGTA TCCATTTCAAGTATAC |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | ref|XP_002520198.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF42253.1| pyruvate dehydrogenase, putative [Ricinus communis] | 214 | 2e-53 |
| Manihot esculenta | blastn | cassava4.1_007407m|PACid:17988402 | 662 | 0.0 |
| FGENESH CDS | blastn | scaffold11495_FGENESH107 10 exon (s) 792465 - 796745 1407 bp, chain + | 664 | 0.0 |
| Arabidopsis thaliana | blastx | AT1G59900.1 | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate dehydrogenase complex E1 alpha subunit | chr1:22051368-22053660 FORWARD LENGTH=389 | 199 | 3e-51 |
| Populus trichocarpa | blastx | POPTR_0008s19680.1|PACid:18248145 | 207 | 7e-54 |
| Vitis vinifera | blastx | GSVIVT01020139001|PACid:17829615 | 190 | 7e-49 |
| Ricinus communis | blastx | 29736.m002097|PACid:16807202 | 214 | 6e-56 |
| InterProScan |
| GO:0008152
Biological Process metabolic process |
| Sequence: Contig04662_1_ORF2 Length: 91 aa | |
| No hits reported. | |
| Sequence: Contig04662_3_ORF2 Length: 53 aa | |
| No hits reported. | |
| Sequence: Contig04662_4_ORF1 Length: 110 aa | ||||||||||||||||
| InterPro IPR001017 Domain |
| |||||||||||||||
| noIPR unintegrated |
| |||||||||||||||
![[1-82]T 3e-37 PF00676 E1_dh](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
![[1-89]T 9.7e-24 G3DSA:3.40.50.970 no description](http://pmix.psc.riken.jp/img/interpro/X2.gif){kind=small}
![[1-110]T 2e-69 PTHR11516 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)](http://pmix.psc.riken.jp/img/interpro/X4.gif){kind=small}
![[1-91]T 1.6e-23 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)](http://pmix.psc.riken.jp/img/interpro/B.gif){kind=small}
| Sequence: Contig04662_5_ORF2 Length: 72 aa | |
| No hits reported. | |
| Sequence: Contig04662_6_ORF2 Length: 50 aa | |
| No hits reported. | |
