Summary
| Sequence ID | ||
| Sequence Length | 565 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | Mapped | |
| Gbrowse Ptr | Mapped | |
| Gbrowse Vvi | Mapped | |
| Gbrowse Ath | - | |
| Transcript scaffold composed of the full-length cDNA(s) | Scaffold05657 | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_004411 (Scaffold05657) |
| >Contig04661 GAATATCAAACGACTCTTCAGAGCACAGCTCGGCCATTCTATTCTTCTCTCCTCTCGCCATCGAAACCCCAGATCGCACC TCAACCAATCCACCATTAGACATGGCCTTAGCTAACTGTGCTTCCTCCTCTAGATCCAATCTCCTTAAACCTCTCATCGC CGTCTTATCCTACACTGAGACTCTTCGCCGTCCGATCTCCACCTCCACCGATCCCCTCACTATCGAGACATCTCTTCCCT TCACTTCGCACAATTGTGAACCTCCTTCCCGTTCCGTCGAGACCAATCCCCAAGAGCTTATCTCCTTCTTCCGTGACATG GCCACTATGCGCCGGATGGAGATTGCTGCCGACTCTCTATACAAAGCCAAGCTTATCCGTGGCTTCTGTCACCTCTACGA CGGGCAGGAAGCGGTGGCTGTAGGGATGGAAGCTGGTATTACTAAAAAGGACTGCTGCATCATTACGTCATACCGGGATC ACTGCACGTTCGTTGGTCGCGGTGGGACCCTTCTGGAGGTCTTCTCGGAGCTTATGGGACGCCAGGGCGGGTGTTCAAAG GGGAA |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | ref|XP_002520198.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF42253.1| pyruvate dehydrogenase, putative [Ricinus communis] | 247 | 7e-64 |
| Manihot esculenta | blastn | cassava4.1_008364m|PACid:17988403 | 1090 | 0.0 |
| FGENESH CDS | blastn | scaffold11495_FGENESH107 10 exon (s) 792465 - 796745 1407 bp, chain + | 892 | 0.0 |
| Arabidopsis thaliana | blastx | AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr1:8560777-8563382 REVERSE LENGTH=393 | 211 | 3e-55 |
| Populus trichocarpa | blastx | POPTR_0010s04790.1|PACid:18240850 | 245 | 2e-65 |
| Vitis vinifera | blastx | GSVIVT01027439001|PACid:17834819 | 65.9 | 1e-11 |
| Ricinus communis | blastx | 29736.m002097|PACid:16807202 | 247 | 3e-66 |
| InterProScan |
| GO:0008152
Biological Process metabolic process |
| Sequence: Contig04661_1_ORF2 Length: 103 aa | |||||||
| noIPR unintegrated |
| ||||||
![[29-38]? NA seg seg](http://pmix.psc.riken.jp/img/interpro/G.gif){kind=small}
| Sequence: Contig04661_3_ORF1 Length: 187 aa | ||||||||||||||||
| InterPro IPR001017 Domain |
| |||||||||||||||
| noIPR unintegrated |
| |||||||||||||||
![[104-187]T 3.5e-34 PF00676 E1_dh](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
![[64-187]T 1.3e-21 G3DSA:3.40.50.970 no description](http://pmix.psc.riken.jp/img/interpro/X2.gif){kind=small}
![[82-187]T 5.5e-67 PTHR11516 PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR)](http://pmix.psc.riken.jp/img/interpro/X4.gif){kind=small}
![[12-187]T 8.7e-19 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)](http://pmix.psc.riken.jp/img/interpro/B.gif){kind=small}
| Sequence: Contig04661_5_ORF2 Length: 72 aa | |
| No hits reported. | |
| Sequence: Contig04661_5_ORF3 Length: 56 aa | |
| No hits reported. | |
| Sequence: Contig04661_6_ORF2 Length: 63 aa | |
| No hits reported. | |
