Home > Keyword search > Contig02687

Summary
Sequence ID 
Sequence Length 569 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold03395
Related probe ID of RIKEN ver.1 microarray  R_Mes01_002612 (Scaffold03395)
 
 
Sequence
>Contig02687
CTTGCAACACTGCAACAACCATGAAGCAATTTAAATCCTGGGCAGGTTGTGGCAGCTGTTGGATTTAAGGGCAAGAGACT
TGAAATTCCCCGAGATTTAAATCCTCAAGTTGCTATCATAATTGAGGCTTGCTGGGCAAATGAGCCTTGGAAACGGCCTT
CCTTTGCATCTATTATGGAATCTTTGAGAGCATTGATTAAACCTCCTACGCCTCCAACTGGTCACGCGGAAATGCCATTA
CTTACCTGAAGTCCTGAATAATGTTGAACACTAGTGAAGTCTTCTTTTGTGCACATATTACATCACACGCATTCTTTTGA
CAATTGATAACTGGCAGGGATAATCTATTTAGATACTCTCAGAATCCTTGTTGTACATGTCTGTTCTTGCTAATTGAGAA
TTCTAATTTTTAGCACAACCTAAGGAACTGCACCAATATTTGCATTATCCTTCCTCTGCTGCCAACAAATATTGTTGTCT
GTGATGGGAAAGTTGTACTAAAGTTGCCTCTCATAATTTTGTATGTAATTTGTAACTGGAATTAGCTTAATGAGAAGCAG
CTTCCTGAC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002528586.1| map3k delta-1 protein kinase, putative [Ricinus communis] gb|EEF33794.1| map3k delta-1 protein kinase, putative [Ricinus communis] 144 7e-33
  Manihot esculenta blastn  cassava4.1_001502m|PACid:17961111 446 1e-125
  FGENESH CDS blastn  scaffold06550_FGENESH38 17 exon (s) 307125 - 315508 2253 bp, chain + 371 1e-102
  Arabidopsis thaliana blastx  AT5G03730.1 | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821 119 2e-27
  Populus trichocarpa blastx  POPTR_0016s11050.2|PACid:18251245 138 2e-33
  Vitis vinifera blastx  GSVIVT01033779001|PACid:17839429 140 5e-34
  Ricinus communis blastx  29092.m000453|PACid:16802274 144 3e-35
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
detail
Sequence: Contig02687_1_ORF2  Length: 74 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[1-57]T 2e-13 PD000001 Q6YW44_EEEEE_Q6YW44;Q6YW44_EEEEE_Q6YW44;
InterPro
IPR001245
Domain
Tyrosine protein kinase
PF07714[7-54]T 3.1e-08 PF07714 Pkinase_TyrPkinase_Tyr
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[14-74]T 5.5e-05 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
PTHR23257[1-74]T 8.8e-27 PTHR23257 SERINE-THREONINE PROTEIN KINASESERINE-THREONINE PROTEIN KINASE
PTHR23257:SF80[1-74]T 8.8e-27 PTHR23257:SF80 MAP3K DELTA-1 PROTEIN KINASEMAP3K DELTA-1 PROTEIN KINASE