Home > Keyword search > Contig02425

Summary
Sequence ID 
Sequence Length 555 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold03077
Related probe ID of RIKEN ver.1 microarray  R_Mes01_002364 (Scaffold03077)
 
 
Sequence
>Contig02425
CCAAGAACGTTTGTGAGAGGTTCGTTCCTTCCTGCCCAGACGACTCCAGGTGCATATGGCTACTGCAAATCTAGCACAGG
GAAGCAAGATAGGTCTGCCTCAGAAACCCAGAGGGAATTGTGTTCACAAAAGCAAGTCCAGCAATGCGGCATAGCTACTA
AATATGCACCAGATATAGCTATCAACATCGACTCCAACCCATTTTTCCCGACCCGGGCTGGAATAAATAAGGTGGAACAA
GTTGATGACCGAATTTCAATCAATACAAATTTGCTACACGTCAAGGCTCAGGCTCACGCTCAGCACGCTGGGATCAGCAC
TCCTGCGACTGTCGCAGCTTCTCACAGAAAAGTTGGTACGGTTCAATACGGTATGACAAAAATGTACTAAAGCAGTGGAA
GGATCATTGCAGGGCTGGTGCTAAAACGGAGAGAATTCCATGTACAGGAAAATTGAAAACTAGTTTTTGTCATGAGAAAC
TGTATACCGAAGGTAATAAAGGTGCATATGTATTCTACACAAGAACTCCCATTTTTATAACTTTCTTTTTTTTTT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002300882.1| predicted protein [Populus trichocarpa] >gi|... 161 4e-38 >ref|XP_002300882.1| predicted protein [Populus trichocarpa] gb|EEE80155.1| predicted protein [Populus trichocarpa] 161 4e-38
  Manihot esculenta blastn  cassava4.1_004025m|PACid:17979428 718 0.0
  FGENESH CDS blastn  scaffold07520_FGENESH105 14 exon (s) 733781 - 742556 2109 bp, chain - 718 0.0
  Arabidopsis thaliana blastx  AT2G42880.1 | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840572-17843947 REVERSE LENGTH=606 92.8 1e-19
  Populus trichocarpa blastx  POPTR_0002s06080.1|PACid:18244319 164 4e-41
  Vitis vinifera blastx  GSVIVT01000784001|PACid:17817158 102 9e-23
  Ricinus communis blastx  29682.m000597|PACid:16805689 159 8e-40
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig02425_1_ORF1  Length: 129 aa
No hits reported.
Sequence: Contig02425_3_ORF2  Length: 102 aa
noIPR
unintegrated
unintegrated
seg[89-102]? NA seg segseg
Sequence: Contig02425_6_ORF1  Length: 55 aa
No hits reported.
Sequence: Contig02425_6_ORF2  Length: 75 aa
No hits reported.