Sequence ID |
| |
Sequence Length | 555 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold03077 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_002364 (Scaffold03077) |
>Contig02425 CCAAGAACGTTTGTGAGAGGTTCGTTCCTTCCTGCCCAGACGACTCCAGGTGCATATGGCTACTGCAAATCTAGCACAGG GAAGCAAGATAGGTCTGCCTCAGAAACCCAGAGGGAATTGTGTTCACAAAAGCAAGTCCAGCAATGCGGCATAGCTACTA AATATGCACCAGATATAGCTATCAACATCGACTCCAACCCATTTTTCCCGACCCGGGCTGGAATAAATAAGGTGGAACAA GTTGATGACCGAATTTCAATCAATACAAATTTGCTACACGTCAAGGCTCAGGCTCACGCTCAGCACGCTGGGATCAGCAC TCCTGCGACTGTCGCAGCTTCTCACAGAAAAGTTGGTACGGTTCAATACGGTATGACAAAAATGTACTAAAGCAGTGGAA GGATCATTGCAGGGCTGGTGCTAAAACGGAGAGAATTCCATGTACAGGAAAATTGAAAACTAGTTTTTGTCATGAGAAAC TGTATACCGAAGGTAATAAAGGTGCATATGTATTCTACACAAGAACTCCCATTTTTATAACTTTCTTTTTTTTTT |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ef|XP_002300882.1| predicted protein [Populus trichocarpa] >gi|... 161 4e-38 >ref|XP_002300882.1| predicted protein [Populus trichocarpa] gb|EEE80155.1| predicted protein [Populus trichocarpa] | 161 | 4e-38 |
Manihot esculenta | blastn | cassava4.1_004025m|PACid:17979428 | 718 | 0.0 |
FGENESH CDS | blastn | scaffold07520_FGENESH105 14 exon (s) 733781 - 742556 2109 bp, chain - | 718 | 0.0 |
Arabidopsis thaliana | blastx | AT2G42880.1 | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840572-17843947 REVERSE LENGTH=606 | 92.8 | 1e-19 |
Populus trichocarpa | blastx | POPTR_0002s06080.1|PACid:18244319 | 164 | 4e-41 |
Vitis vinifera | blastx | GSVIVT01000784001|PACid:17817158 | 102 | 9e-23 |
Ricinus communis | blastx | 29682.m000597|PACid:16805689 | 159 | 8e-40 |
InterProScan |
No hits found |
Sequence: Contig02425_1_ORF1 Length: 129 aa | |
No hits reported. |
Sequence: Contig02425_3_ORF2 Length: 102 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig02425_6_ORF1 Length: 55 aa | |
No hits reported. |
Sequence: Contig02425_6_ORF2 Length: 75 aa | |
No hits reported. |