Home > Keyword search > Contig02424

Summary
Sequence ID 
Sequence Length 853 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold03076
Related probe ID of RIKEN ver.1 microarray  R_Mes01_002363 (Scaffold03076)
 
 
Sequence
>Contig02424
ACAAAGAAATAAAAGCCTTGTTACTGTATGCAGTGCTTGTTGAGAAGGTCAACTTTTTACCAAACTTGAACGTTTCAGCG
TTACTATAACAGACAGAAACCACCACTCGTCCACATTTGAGCTGGATGATAAACAACCGAATGCGACAACGCCGCAATAA
TAATAATAATAAATCTAAACCTTTAAAAACTTTACCTTTCTTAGAAAATCTTCATCCTCCCAAACATGAAGGTAACTTTC
AAAAACCTCTTGCTTTACCTTTCTTAGAAAATCTTCATCCTCCCAAACATGAAGGTAACTTTCAGAAACCTCTTACTTTA
CCTCTAGTGTAAAATACAGGGGAAGACAAATTAAGGCTTGCTTTACATGGTTTTCTTTTTCTTTTTTTCCTTTTTTTAAA
AAAAAAAGAAAGTTATAAAAATGGGAGTTCTTGTGTAGAATACATATGCACCTTTATTACCTTCGGTATACAGTTTCTCA
TGACAAAAACTAGTTTTCAATTTTCCTGTACATGGAATTCTCTCCGTTTTAGCACCAGCCCTGCAATGATCCTTCCACTG
CTTTAGTACATTTTTGTCATACCGTATTGAACCGTACCAACTTTTCTGTGAGAAGCTGCGACAGTCGCAGGAGTGCTGAT
CCCAGCGTGCTGAGCGTGAGCCTGAGCCTTGACGTGCAGCAAATTTGTATTGATTGAAATTCGGTCATCAACTTGTTCCA
CCTTATTTATTCCAGCCCGGGGCCATAAAAATGGGTTGGAGTCGATGTTGATAGCTATATCTGGCACATATTTAGTAGCT
ATGCCGCATTGCTGGACTTGCTTTTGTGATCACAATTCCCTCTGGGTTTCTGA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002300882.1| predicted protein [Populus trichocarpa] >gi|... 121 2e-25 >ref|XP_002300882.1| predicted protein [Populus trichocarpa] gb|EEE80155.1| predicted protein [Populus trichocarpa] 121 2e-25
  Manihot esculenta blastn  cassava4.1_004025m|PACid:17979428 521 1e-147
  FGENESH CDS blastn  scaffold07520_FGENESH105 14 exon (s) 733781 - 742556 2109 bp, chain - 521 1e-147
  Arabidopsis thaliana blastx  AT2G42880.1 | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840572-17843947 REVERSE LENGTH=606 85.1 5e-17
  Populus trichocarpa blastx  POPTR_0002s06080.1|PACid:18244319 121 8e-28
  Vitis vinifera blastx  GSVIVT01000784001|PACid:17817158 83.2 1e-16
  Ricinus communis blastx  29682.m000597|PACid:16805689 112 2e-25
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig02424_2_ORF2  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[38-48]? NA seg segseg
Sequence: Contig02424_3_ORF2  Length: 80 aa
noIPR
unintegrated
unintegrated
seg[15-27]? NA seg segseg
Sequence: Contig02424_3_ORF3  Length: 77 aa
noIPR
unintegrated
unintegrated
seg[6-25]? NA seg segseg
Sequence: Contig02424_3_ORF4  Length: 62 aa
No hits reported.
Sequence: Contig02424_5_ORF2  Length: 88 aa
No hits reported.
Sequence: Contig02424_5_ORF3  Length: 70 aa
noIPR
unintegrated
unintegrated
seg[12-31]? NA seg segseg
Sequence: Contig02424_6_ORF2  Length: 102 aa
noIPR
unintegrated
unintegrated
seg[89-102]? NA seg segseg