Sequence ID | ||
Sequence Length | 853 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | - | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold03076 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_002363 (Scaffold03076) |
>Contig02424 ACAAAGAAATAAAAGCCTTGTTACTGTATGCAGTGCTTGTTGAGAAGGTCAACTTTTTACCAAACTTGAACGTTTCAGCG TTACTATAACAGACAGAAACCACCACTCGTCCACATTTGAGCTGGATGATAAACAACCGAATGCGACAACGCCGCAATAA TAATAATAATAAATCTAAACCTTTAAAAACTTTACCTTTCTTAGAAAATCTTCATCCTCCCAAACATGAAGGTAACTTTC AAAAACCTCTTGCTTTACCTTTCTTAGAAAATCTTCATCCTCCCAAACATGAAGGTAACTTTCAGAAACCTCTTACTTTA CCTCTAGTGTAAAATACAGGGGAAGACAAATTAAGGCTTGCTTTACATGGTTTTCTTTTTCTTTTTTTCCTTTTTTTAAA AAAAAAAGAAAGTTATAAAAATGGGAGTTCTTGTGTAGAATACATATGCACCTTTATTACCTTCGGTATACAGTTTCTCA TGACAAAAACTAGTTTTCAATTTTCCTGTACATGGAATTCTCTCCGTTTTAGCACCAGCCCTGCAATGATCCTTCCACTG CTTTAGTACATTTTTGTCATACCGTATTGAACCGTACCAACTTTTCTGTGAGAAGCTGCGACAGTCGCAGGAGTGCTGAT CCCAGCGTGCTGAGCGTGAGCCTGAGCCTTGACGTGCAGCAAATTTGTATTGATTGAAATTCGGTCATCAACTTGTTCCA CCTTATTTATTCCAGCCCGGGGCCATAAAAATGGGTTGGAGTCGATGTTGATAGCTATATCTGGCACATATTTAGTAGCT ATGCCGCATTGCTGGACTTGCTTTTGTGATCACAATTCCCTCTGGGTTTCTGA |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ef|XP_002300882.1| predicted protein [Populus trichocarpa] >gi|... 121 2e-25 >ref|XP_002300882.1| predicted protein [Populus trichocarpa] gb|EEE80155.1| predicted protein [Populus trichocarpa] | 121 | 2e-25 |
Manihot esculenta | blastn | cassava4.1_004025m|PACid:17979428 | 521 | 1e-147 |
FGENESH CDS | blastn | scaffold07520_FGENESH105 14 exon (s) 733781 - 742556 2109 bp, chain - | 521 | 1e-147 |
Arabidopsis thaliana | blastx | AT2G42880.1 | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840572-17843947 REVERSE LENGTH=606 | 85.1 | 5e-17 |
Populus trichocarpa | blastx | POPTR_0002s06080.1|PACid:18244319 | 121 | 8e-28 |
Vitis vinifera | blastx | GSVIVT01000784001|PACid:17817158 | 83.2 | 1e-16 |
Ricinus communis | blastx | 29682.m000597|PACid:16805689 | 112 | 2e-25 |
InterProScan |
No hits found |
Sequence: Contig02424_2_ORF2 Length: 54 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig02424_3_ORF2 Length: 80 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig02424_3_ORF3 Length: 77 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig02424_3_ORF4 Length: 62 aa | |
No hits reported. |
Sequence: Contig02424_5_ORF2 Length: 88 aa | |
No hits reported. |
Sequence: Contig02424_5_ORF3 Length: 70 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig02424_6_ORF2 Length: 102 aa | |||||||
noIPR unintegrated |
|