Home > Keyword search > Contig02045

Summary
Sequence ID 
Sequence Length 640 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold02634
Related probe ID of RIKEN ver.1 microarray  R_Mes01_002018 (Scaffold02634)
 
 
Sequence
>Contig02045
GGTAGTTCACCTAAATAAGATTGAAAAGGTTGTCGTTACGTTACAAAAGAGAAACGGACTCTCCGGCCCGCCTGTGAGAT
GAGATAAGCCAAAAAAATATCCACATTATTTATTGCGACGATTTGCTTTTGCTTTCGCTTTCGCACCCTACTTTGATCGC
GACGAGATAACGGACCTTGGTCGCTGCGAAGTTTCATAGAATTCATCGTTGACAACCACTTCACTACAGCAGATCGAATA
CCAAGCTTCTCAATCTTTTTTTTTTTTAGCTTCACGGAGAACCATAATTTGTGCTTTTATGGCGCCAAATTGAGCGAGGC
TGGATTTTGGACGAGCTCCGGCGATGAAATGGGCCAATTTGTCGATTGTTTCGCTATAGCAATGTGTTTCTTTTGTTGGG
AATTGGATGAATTTTGAATTTGTTCCAGAGAAATTTTAATTGAGTTTGGGGATGAGTTCTTAGCGGATTGTGAAGTTGGT
TTATTTGGATAAGGAAGATATTCACAAGATCAAAAGAAATGGCTACTCCTGTTGAGCCTCCAAATGGAGTTAGGATTCAG
GGGAAGCATTACTATTCTATGTGGCAAACCTTGTTTGAGATTGACACGAAATATGTGCCCATCAAGCCTATTGGCCGAGG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002306886.1| predicted protein [Populus trichocarpa] >gi|... 88 1e-15 >ref|XP_002306886.1| predicted protein [Populus trichocarpa] gb|EEE93882.1| predicted protein [Populus trichocarpa] 87.8 1e-15
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx  AT1G59580.2 | Symbols: ATMPK2, MPK2 | mitogen-activated protein kinase homolog 2 | chr1:21884521-21885743 FORWARD LENGTH=376 84.0 8e-17
  Populus trichocarpa blastx  POPTR_0005s25270.2|PACid:18208046 87.8 6e-18
  Vitis vinifera blastx - - -
  Ricinus communis blastx  30170.m013789|PACid:16821634 85.5 2e-17
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig02045_1_ORF2  Length: 86 aa
noIPR
unintegrated
unintegrated
seg[30-39]? NA seg segseg
Sequence: Contig02045_1_ORF3  Length: 49 aa
No hits reported.
Sequence: Contig02045_3_ORF1  Length: 55 aa
No hits reported.
Sequence: Contig02045_4_ORF2  Length: 61 aa
No hits reported.
Sequence: Contig02045_5_ORF2  Length: 60 aa
No hits reported.
Sequence: Contig02045_6_ORF2  Length: 70 aa
noIPR
unintegrated
unintegrated
seg[32-41]? NA seg segseg
Sequence: Contig02045_6_ORF3  Length: 86 aa
noIPR
unintegrated
unintegrated
seg[1-18]? NA seg segseg