Home > Keyword search > Contig02001

Summary
Sequence ID 
Sequence Length 507 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold02586
Related probe ID of RIKEN ver.1 microarray  R_Mes01_001981 (Scaffold02586)
 
 
Sequence
>Contig02001
GGCTCAAATTAAAAGTGTAATAAATTAAAAGTGAAATCCTTATACATTTCTTACATAAGGGTGCTTTCCACTTGTTTAGG
AGTATACAAGTATTTGACACTTTCTCATCAATTCTAACTTCTTACCTCTAACCAAACAACATCTTAGGCTTTCACTTAAA
TAATAGCAGCAAAACCGAGCACGAAGGCTTCCAAGGAGAGAACAAAGGAAGCTTAATTTAATCTAGGACATGGGACTGAT
AGAGAAGGACACATGCCATTAGGCAAATAATCTCTTGATTTACAATTACCACTCTCGTATGCTTTGCCTAATTCAATGGT
AAGTTACAAATAGTATTTCATATATATACATATGCATCCCTAGTTAAGCTGCTTGCATTTGAATCCCTGATTCTGAACTT
GTCAGTAAAGATTCTGCAACCTCTTCCTCTTCCTCAGGAAAAAAATCTGCATGCTTTTCTTAAGGATTAAGGCTTCTAAC
AAATTTGGTAAAAGCAGGAAAATGCTC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002516865.1| Beta-amylase, putative [Ricinus communis] >g... 62 4e-08 >ref|XP_002516865.1| Beta-amylase, putative [Ricinus communis] gb|EEF45479.1| Beta-amylase, putative [Ricinus communis] 61.6 4e-08
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx - - -
  Populus trichocarpa blastx  POPTR_0008s20870.1|PACid:18249324 50.8 5e-07
  Vitis vinifera blastx - - -
  Ricinus communis blastx  29726.m003986|PACid:16806698 61.6 2e-10
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig02001_3_ORF2  Length: 52 aa
No hits reported.