Sequence ID | ||
Sequence Length | 772 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold02585 Scaffold02586 | |
Related probe ID of RIKEN ver.1 microarray | - (Scaffold02585) R_Mes01_001981 (Scaffold02586) |
>Contig02000 GGCAACCTTCAACTTCATTTATACACGCTACTTTCTTCTCCATTTTCTCGGCAACCGAAAGTCTTCCTATATTCTCGCGT CCAATTCGATTTTCTTATCCAAACTTAAATTTTCTCTGTTATTTCCCGATTTTAGGTCCTATTCACCTGCCAGATTTAGA TCGCCGGTTTCTATTCAGATTTTTTCGATATGGAGGTGTCGGTGATCGGCAGCTCTCAGGCGACTATTTGCAGAACCGAA TTAGTTCATAGGGAGCTGAGTTTTTGTGTTCCCAGAAGAAACTATACTAGTGTTTCTTTCTCTGATTCAGGAAAGAGGTG GAGAAGAAACTCTTCCCTGCGCTTTACCTTAAATGCGATCCAAACAGAACCCGTCCTCTCCAACAATCTCTCCACTCGAG ATCGTGCTTCCGGGTCCAAATCGCTCGATGGTGTAAGGTTATATGTTGGGCTGCCCTTGGATGCAGTTTCCGACTGTAAT ACGGTCAACCATGCTAGAGCAATCTCAGTAGGACTTAAAGCTCTGAAATTATTGGGAATTGAAGGTGTGGAGATGGCCGT GTGGTGGGGAATAGCCGAGAAGGAAGCAATGGGCAAGTACGAGTGGGAAGGCTACCTTGCTCTTGCAGAGATGGTTGAGA ATGCTGGTCTCAAACTCCACGTCTCACTCTGCTTCCACGCTAATGAACAACCTAAAATCCCACTCCCTGTGTGGGTATCC CATATTGGTGAATCAGAACCTGGTATTTTCTTTGCTGATAAGTCAGGGCATA |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ef|XP_002516865.1| Beta-amylase, putative [Ricinus communis] >g... 260 1e-67 >ref|XP_002516865.1| Beta-amylase, putative [Ricinus communis] gb|EEF45479.1| Beta-amylase, putative [Ricinus communis] | 260 | 1e-67 |
Manihot esculenta | blastn | cassava4.1_005239m|PACid:17971438 | 1140 | 0.0 |
FGENESH CDS | blastn | scaffold09365_FGENESH20 3 exon (s) 148762 - 150940 1608 bp, chain - | 1140 | 0.0 |
Arabidopsis thaliana | blastx | AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:6226138-6227999 FORWARD LENGTH=536 | 207 | 6e-54 |
Populus trichocarpa | blastx | POPTR_0008s20870.1|PACid:18249324 | 246 | 2e-65 |
Vitis vinifera | blastx | GSVIVT01017808001|PACid:17827917 | 220 | 5e-58 |
Ricinus communis | blastx | 29726.m003986|PACid:16806698 | 260 | 4e-70 |
InterProScan |
No hits found |
Sequence: Contig02000_1_ORF2 Length: 204 aa | ||||||||||
InterPro IPR001554 Family |
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InterPro IPR013781 Domain |
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InterPro IPR017853 Domain |
|
Sequence: Contig02000_2_ORF1 Length: 67 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig02000_2_ORF2 Length: 66 aa | |
No hits reported. |
Sequence: Contig02000_3_ORF1 Length: 82 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig02000_3_ORF2 Length: 57 aa | |
No hits reported. |
Sequence: Contig02000_6_ORF1 Length: 52 aa | |
No hits reported. |
Sequence: Contig02000_6_ORF2 Length: 109 aa | |
No hits reported. |