Home > Keyword search > Contig02000

Summary
Sequence ID 
Sequence Length 772 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold02585
 Scaffold02586
Related probe ID of RIKEN ver.1 microarray  - (Scaffold02585)
 R_Mes01_001981 (Scaffold02586)
 
 
Sequence
>Contig02000
GGCAACCTTCAACTTCATTTATACACGCTACTTTCTTCTCCATTTTCTCGGCAACCGAAAGTCTTCCTATATTCTCGCGT
CCAATTCGATTTTCTTATCCAAACTTAAATTTTCTCTGTTATTTCCCGATTTTAGGTCCTATTCACCTGCCAGATTTAGA
TCGCCGGTTTCTATTCAGATTTTTTCGATATGGAGGTGTCGGTGATCGGCAGCTCTCAGGCGACTATTTGCAGAACCGAA
TTAGTTCATAGGGAGCTGAGTTTTTGTGTTCCCAGAAGAAACTATACTAGTGTTTCTTTCTCTGATTCAGGAAAGAGGTG
GAGAAGAAACTCTTCCCTGCGCTTTACCTTAAATGCGATCCAAACAGAACCCGTCCTCTCCAACAATCTCTCCACTCGAG
ATCGTGCTTCCGGGTCCAAATCGCTCGATGGTGTAAGGTTATATGTTGGGCTGCCCTTGGATGCAGTTTCCGACTGTAAT
ACGGTCAACCATGCTAGAGCAATCTCAGTAGGACTTAAAGCTCTGAAATTATTGGGAATTGAAGGTGTGGAGATGGCCGT
GTGGTGGGGAATAGCCGAGAAGGAAGCAATGGGCAAGTACGAGTGGGAAGGCTACCTTGCTCTTGCAGAGATGGTTGAGA
ATGCTGGTCTCAAACTCCACGTCTCACTCTGCTTCCACGCTAATGAACAACCTAAAATCCCACTCCCTGTGTGGGTATCC
CATATTGGTGAATCAGAACCTGGTATTTTCTTTGCTGATAAGTCAGGGCATA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002516865.1| Beta-amylase, putative [Ricinus communis] >g... 260 1e-67 >ref|XP_002516865.1| Beta-amylase, putative [Ricinus communis] gb|EEF45479.1| Beta-amylase, putative [Ricinus communis] 260 1e-67
  Manihot esculenta blastn  cassava4.1_005239m|PACid:17971438 1140 0.0
  FGENESH CDS blastn  scaffold09365_FGENESH20 3 exon (s) 148762 - 150940 1608 bp, chain - 1140 0.0
  Arabidopsis thaliana blastx  AT5G18670.1 | Symbols: BMY3, BAM9 | beta-amylase 3 | chr5:6226138-6227999 FORWARD LENGTH=536 207 6e-54
  Populus trichocarpa blastx  POPTR_0008s20870.1|PACid:18249324 246 2e-65
  Vitis vinifera blastx  GSVIVT01017808001|PACid:17827917 220 5e-58
  Ricinus communis blastx  29726.m003986|PACid:16806698 260 4e-70
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig02000_1_ORF2  Length: 204 aa
InterPro
IPR001554
Family
Glycoside hydrolase, family 14
PR00750[126-140]T 2.2e-06 PR00750 BETAAMYLASE[147-165]T 2.2e-06 PR00750 BETAAMYLASEBETAAMYLASE
PF01373[95-203]T 5.8e-15 PF01373 Glyco_hydro_14Glyco_hydro_14
InterPro
IPR013781
Domain
Glycoside hydrolase, subgroup, catalytic core
G3DSA:3.20.20.80[81-204]T 1.3e-37 G3DSA:3.20.20.80 no descriptionno description
InterPro
IPR017853
Domain
Glycoside hydrolase, catalytic core
SSF51445[85-204]T 8.9e-40 SSF51445 (Trans)glycosidases(Trans)glycosidases
Sequence: Contig02000_2_ORF1  Length: 67 aa
noIPR
unintegrated
unintegrated
seg[31-41]? NA seg segseg
Sequence: Contig02000_2_ORF2  Length: 66 aa
No hits reported.
Sequence: Contig02000_3_ORF1  Length: 82 aa
noIPR
unintegrated
unintegrated
seg[51-62]? NA seg segseg
Sequence: Contig02000_3_ORF2  Length: 57 aa
No hits reported.
Sequence: Contig02000_6_ORF1  Length: 52 aa
No hits reported.
Sequence: Contig02000_6_ORF2  Length: 109 aa
No hits reported.