Home > Keyword search > Contig01972

Summary
Sequence ID 
Sequence Length 1300 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold02550
Related probe ID of RIKEN ver.1 microarray  R_Mes01_001957 (Scaffold02550)
 
 
Sequence
>Contig01972
AAAGAAATGCTACCAGCAAAATGAATCAGAAATATGATGGAATGTATACATCCATAATGCAAATAGCTCACCATCTCTTC
TACACATAATCCCTATTTTGACAACAATGACAACACTTGATTATTGCACGGCATTATACCTTGAAGTGTCATAAACTTGT
AAAAGAGTACCGATATTATGCCTTGGCCCAAAAAAAGAAGCTTCGTGAACAGGACATGAACAATATCCAGCCTCCACAAA
GGGAGATTTATCAATGGATGTGCCACATTGTTCTTTAAGATAAGTATTTAACAGATTGAAAAGGTTCAGGAGGGATACTT
TATTGGCTCAGGTTGCATGGCTTTTTGGATGAGTTCGGTCTGCTCCTTCACATGCACCTGGTAGAATCCGGTGGCTGTTG
CAGCAGAGGGGGCACGTCCAACATACTTGATGTCCTCCAGAGATCCTCTTCCCAGTGCTTTCATAGCAGTGCAAAGGCGG
AGCAAAATGTAATTGTATGCACCCATGTTCATTGGCTCTTCCTGGCACCAAACAATCTCGGCATTTGGATAGCGCTTGAG
CTCACGCTGGATGAGATCATATGGGAATGGACACAGCTGCTCCACCCTACAAATTGCAATATCCTTAGCACCATTCTTTT
TGCGCTCTTCATCAAGCTCATAGTAAACCTTTCCAGAGCAAAGAACCAGGCGTCTGATACCCTCTTCAAGGTCAGAGTGG
TCATTCTGATCCTTTATGAGACGCTTAAATCTGGTTCCCTGTTTATCAAAGCCCAGGGTGGCCTTGGACATCATCAAACT
CGGAAAGATTTGATTTGCAGTCCTTGTGACGAAGTAGGTTTTTTGGAGCCATCACAATGAGGGGCTTACGGAACTCCCTG
TGTAGCTGGCGCCGCAAGACATGGAAATAATTAGCAGGAGTTGTAACATTTACAACCTGCCAGTTACATTCCTGGATTTG
CTTCCGAAGTGTTGGGTCCATGTCTGGAATGACATAAGGATTGTCATCACTCATCTGAAGGAAGCGTTCCAACCGTGCAC
TTGAATGTTCAGGACCCTGACCATCATATCCATGAGGAAGAAGCACAACAAGGCCAGTTTGACGCAACCACTTCGATTCC
CCACTACTCAGGAACTGATCAAATATCACTTGAGCCCCATTAGCAAAGTCACCAAATTGAGCTTCCCAGATAACCAATGA
ATTTGGATTTTCCATTGAGTAACCCAATTCAAATCCAAGAACAGCAAACTCTGAAAGAGAACTGTTGCTGACAGTAAACA
ATTCCTCATCTTGGTTAATG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002528465.1| 2-oxoglutarate dehydrogenase, putative [Ricinus communis] gb|EEF33948.1| 2-oxoglutarate dehydrogenase, putative [Ricinus communis] 349 1e-178
  Manihot esculenta blastn  cassava4.1_000822m|PACid:17992054 1957 0.0
  FGENESH CDS blastn  scaffold03440_FGENESH1 8 exon (s) 5263 - 9984 3117 bp, chain + 1140 0.0
  Arabidopsis thaliana blastx  AT5G65750.1 | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr5:26304212-26307947 FORWARD LENGTH=1025 344 1e-171
  Populus trichocarpa blastx  POPTR_0010s21610.1|PACid:18240622 350 1e-175
  Vitis vinifera blastx  GSVIVT01016597001|PACid:17826992 353 1e-153
  Ricinus communis blastx  29585.m000607|PACid:16803171 349 1e-180
 
 
Gene Ontology 
InterProScan
GO:0004591
Molecular Function
oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0006096
Biological Process
glycolysis
GO:0030976
Molecular Function
thiamin pyrophosphate binding
 
 
InterProScan result 
Sequence: Contig01972_1_ORF2  Length: 52 aa
No hits reported.
Sequence: Contig01972_1_ORF3  Length: 51 aa
No hits reported.
Sequence: Contig01972_3_ORF2  Length: 55 aa
No hits reported.
Sequence: Contig01972_3_ORF3  Length: 186 aa
No hits reported.
Sequence: Contig01972_3_ORF4  Length: 56 aa
No hits reported.
Sequence: Contig01972_4_ORF1  Length: 177 aa
InterPro
IPR005475
Domain
Transketolase, central region
PF02779[8-159]T 3.5e-54 PF02779 Transket_pyrTransket_pyr
InterPro
IPR011603
Family
2-oxoglutarate dehydrogenase, E1 component
PTHR23152[1-170]T 1.1e-119 PTHR23152 2-OXOGLUTARATE DEHYDROGENASE2-OXOGLUTARATE DEHYDROGENASE
noIPR
unintegrated
unintegrated
SSF52518[10-166]T 1.9e-33 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)
Sequence: Contig01972_4_ORF2  Length: 77 aa
No hits reported.
Sequence: Contig01972_4_ORF3  Length: 68 aa
noIPR
unintegrated
unintegrated
seg[6-14]? NA seg segseg
Sequence: Contig01972_5_ORF2  Length: 74 aa
noIPR
unintegrated
unintegrated
seg[45-60]? NA seg segseg
Sequence: Contig01972_6_ORF1  Length: 50 aa
No hits reported.
Sequence: Contig01972_6_ORF2  Length: 181 aa
InterPro
IPR011603
Family
2-oxoglutarate dehydrogenase, E1 component
PTHR23152[32-172]T 1.1e-66 PTHR23152 2-OXOGLUTARATE DEHYDROGENASE2-OXOGLUTARATE DEHYDROGENASE
Sequence: Contig01972_6_ORF3  Length: 64 aa
No hits reported.