Sequence ID | ||
Sequence Length | 1300 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | Mapped | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold02550 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_001957 (Scaffold02550) |
>Contig01972 AAAGAAATGCTACCAGCAAAATGAATCAGAAATATGATGGAATGTATACATCCATAATGCAAATAGCTCACCATCTCTTC TACACATAATCCCTATTTTGACAACAATGACAACACTTGATTATTGCACGGCATTATACCTTGAAGTGTCATAAACTTGT AAAAGAGTACCGATATTATGCCTTGGCCCAAAAAAAGAAGCTTCGTGAACAGGACATGAACAATATCCAGCCTCCACAAA GGGAGATTTATCAATGGATGTGCCACATTGTTCTTTAAGATAAGTATTTAACAGATTGAAAAGGTTCAGGAGGGATACTT TATTGGCTCAGGTTGCATGGCTTTTTGGATGAGTTCGGTCTGCTCCTTCACATGCACCTGGTAGAATCCGGTGGCTGTTG CAGCAGAGGGGGCACGTCCAACATACTTGATGTCCTCCAGAGATCCTCTTCCCAGTGCTTTCATAGCAGTGCAAAGGCGG AGCAAAATGTAATTGTATGCACCCATGTTCATTGGCTCTTCCTGGCACCAAACAATCTCGGCATTTGGATAGCGCTTGAG CTCACGCTGGATGAGATCATATGGGAATGGACACAGCTGCTCCACCCTACAAATTGCAATATCCTTAGCACCATTCTTTT TGCGCTCTTCATCAAGCTCATAGTAAACCTTTCCAGAGCAAAGAACCAGGCGTCTGATACCCTCTTCAAGGTCAGAGTGG TCATTCTGATCCTTTATGAGACGCTTAAATCTGGTTCCCTGTTTATCAAAGCCCAGGGTGGCCTTGGACATCATCAAACT CGGAAAGATTTGATTTGCAGTCCTTGTGACGAAGTAGGTTTTTTGGAGCCATCACAATGAGGGGCTTACGGAACTCCCTG TGTAGCTGGCGCCGCAAGACATGGAAATAATTAGCAGGAGTTGTAACATTTACAACCTGCCAGTTACATTCCTGGATTTG CTTCCGAAGTGTTGGGTCCATGTCTGGAATGACATAAGGATTGTCATCACTCATCTGAAGGAAGCGTTCCAACCGTGCAC TTGAATGTTCAGGACCCTGACCATCATATCCATGAGGAAGAAGCACAACAAGGCCAGTTTGACGCAACCACTTCGATTCC CCACTACTCAGGAACTGATCAAATATCACTTGAGCCCCATTAGCAAAGTCACCAAATTGAGCTTCCCAGATAACCAATGA ATTTGGATTTTCCATTGAGTAACCCAATTCAAATCCAAGAACAGCAAACTCTGAAAGAGAACTGTTGCTGACAGTAAACA ATTCCTCATCTTGGTTAATG |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002528465.1| 2-oxoglutarate dehydrogenase, putative [Ricinus communis] gb|EEF33948.1| 2-oxoglutarate dehydrogenase, putative [Ricinus communis] | 349 | 1e-178 |
Manihot esculenta | blastn | cassava4.1_000822m|PACid:17992054 | 1957 | 0.0 |
FGENESH CDS | blastn | scaffold03440_FGENESH1 8 exon (s) 5263 - 9984 3117 bp, chain + | 1140 | 0.0 |
Arabidopsis thaliana | blastx | AT5G65750.1 | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr5:26304212-26307947 FORWARD LENGTH=1025 | 344 | 1e-171 |
Populus trichocarpa | blastx | POPTR_0010s21610.1|PACid:18240622 | 350 | 1e-175 |
Vitis vinifera | blastx | GSVIVT01016597001|PACid:17826992 | 353 | 1e-153 |
Ricinus communis | blastx | 29585.m000607|PACid:16803171 | 349 | 1e-180 |
InterProScan |
GO:0004591
Molecular Function oxoglutarate dehydrogenase (succinyl-transferring) activity |
GO:0006096
Biological Process glycolysis |
GO:0030976
Molecular Function thiamin pyrophosphate binding |
Sequence: Contig01972_1_ORF2 Length: 52 aa | |
No hits reported. |
Sequence: Contig01972_1_ORF3 Length: 51 aa | |
No hits reported. |
Sequence: Contig01972_3_ORF2 Length: 55 aa | |
No hits reported. |
Sequence: Contig01972_3_ORF3 Length: 186 aa | |
No hits reported. |
Sequence: Contig01972_3_ORF4 Length: 56 aa | |
No hits reported. |
Sequence: Contig01972_4_ORF1 Length: 177 aa | |||||||
InterPro IPR005475 Domain |
| ||||||
InterPro IPR011603 Family |
| ||||||
noIPR unintegrated |
|
Sequence: Contig01972_4_ORF2 Length: 77 aa | |
No hits reported. |
Sequence: Contig01972_4_ORF3 Length: 68 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig01972_5_ORF2 Length: 74 aa | |||||||
noIPR unintegrated |
|
Sequence: Contig01972_6_ORF1 Length: 50 aa | |
No hits reported. |
Sequence: Contig01972_6_ORF2 Length: 181 aa | |||||||
InterPro IPR011603 Family |
|
Sequence: Contig01972_6_ORF3 Length: 64 aa | |
No hits reported. |