Home > Keyword search > Contig01469

Summary
Sequence ID 
Sequence Length 620 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold01949
Related probe ID of RIKEN ver.1 microarray  R_Mes01_001499 (Scaffold01949)
 
 
Sequence
>Contig01469
GGTGACTTGTGTTCTCTGTTCTCTCTTTCTTTCCCTCAAAGAAAATAAAACTCAAAACCCACAAGCAGAGGAAACCAGGG
CAAGAAGAAGAAGAAGAAGAATTCTCTAATTCTTTTCTTTTTTTCTGAGATTTCTTGTAATCATCGGCTTGTGATTCTTT
CACCCATGGATTGGTTTCGCGGAGATTGTATTGGTTGTGGTAGCTTTTCCACTGTTAATTTGGCAATTCCCAGGAGTATC
TCTGCTCCTTTAATGGCGGTGAAATCTTGTGATGTTTTTGAATCTTCTTTGCTTGAGAATGAGAAGGATGTCTTGACTCA
ACTTGGGAATTGTGAGCATGTCATCCAGTGTTTCGGCGGTGATCAGAGTGTTGAAAACGGGAAGATGTTGTATAATTTGC
TGTTAGAGTATGCTTCTGGCGGTAGTTTATCTCATTTGGTAAAGAAATCTGGTGGTTGCTTGCCGGAATCGGATGCCAGA
CGCTACACGAGATCGATATTAAAGGGTCTTCATTATATTCACGCCAAAGGGTTTGCTCACTGCGATATAAAGCTTCAGAA
TATTTTGTTGTTTGAGAATGGGGAAGCGAAGATTGCAGACTTCGGATTGGCGAAGAAACA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002523600.1| ATP binding protein, putative [Ricinus communis] gb|EEF38795.1| ATP binding protein, putative [Ricinus communis] 238 4e-61
  Manihot esculenta blastn  cassava4.1_020998m|PACid:17985420 898 0.0
  FGENESH CDS blastn  scaffold10453_FGENESH2 3 exon (s) 44212 - 45802 1188 bp, chain - 898 0.0
  Arabidopsis thaliana blastx  AT4G36950.1 | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336 176 1e-44
  Populus trichocarpa blastx  POPTR_0005s18230.1|PACid:18208980 199 1e-51
  Vitis vinifera blastx  GSVIVT01022117001|PACid:17831030 170 5e-43
  Ricinus communis blastx  30115.m001222|PACid:16818001 238 2e-63
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: Contig01469_1_ORF2  Length: 190 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[46-190]T 1e-41 PD000001 Q6K1M3_ARATH_Q6K1M3;Q6K1M3_ARATH_Q6K1M3;
PS50011[42-190]T 25.277 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[42-190]T 2.2e-08 SM00220 no descriptionno description
InterPro
IPR008271
Active_site
Serine/threonine protein kinase, active site
PS00108[162-174]? NA PS00108 PROTEIN_KINASE_STPROTEIN_KINASE_ST
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[12-189]T 4.8e-35 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017441
Conserved_site
Protein kinase ATP binding, conserved site
PS00107[48-72]? NA PS00107 PROTEIN_KINASE_ATPPROTEIN_KINASE_ATP
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[42-190]T 3.3e-32 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[115-189]T 2e-21 G3DSA:1.10.510.10 no descriptionno description
PTHR22986[42-189]T 8.7e-60 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF58[42-189]T 8.7e-60 PTHR22986:SF58 MITOGEN ACTIVATED PROTEIN KINASE-RELATEDMITOGEN ACTIVATED PROTEIN KINASE-RELATED
seg[12-17]? NA seg segseg
Sequence: Contig01469_4_ORF2  Length: 50 aa
No hits reported.
Sequence: Contig01469_5_ORF1  Length: 92 aa
No hits reported.
Sequence: Contig01469_5_ORF2  Length: 71 aa
noIPR
unintegrated
unintegrated
coil[19-40]? NA coil coiled-coilcoiled-coil
seg[39-44]? NA seg segseg
Sequence: Contig01469_6_ORF2  Length: 58 aa
No hits reported.