Home > Keyword search > Contig00779

Summary
Sequence ID 
Sequence Length 1064 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold01034
 Scaffold01035
Related probe ID of RIKEN ver.1 microarray  - (Scaffold01034)
 R_Mes01_000793 (Scaffold01035)
 
 
Sequence
>Contig00779
TTTTTCTCTCTGGAGAGTGCTCTCTGTACACGCGTTTCTATAGAGGAACGTATCTGCGTCTCCTCTTCTATTCTCTTAAT
TCTTCCTGAGGTTTTATCGGATAAAAGATGCCTGCTTGGTGGGGGAAAAAGTCCTCCAGGAACAAGGAAGAGAGGCTGCA
AGATAACCCAAATGGGAAAAACGATATTACCAAGAAGAAATCCACTAAAGAAAAGCGCAGGAGCCTTGATGAGGCCGTTT
CTACCCGGAATTCGCCACGTGGGAGCAAAGATTTCGCGGGTGGGTCTTCCGGGTTTTCGGGTTTCGAGTCGGATTCGGCT
TTGAAGAGAGGGCTTCCACTTCCTACGCCGTCTGGGTCTGGGAGTGATCATGGGATTGTTGGGGTTGGGTTGGGATCTGG
GTCTGCTTCTGGTTCCATGTCCAGTGTGAGCTCTTCTGGGTCATCCGGTGAGGATCATCCAATTGCAAACGATCATAACA
GTAGTCTTTTTGGTGGCTACAGAGGACATGGTGATATAAGGTTCAATGCGAGGTCAAGGAGCCCTGGTCCAGGATCAAGA
AGTCCAGGTCCTGGGTCTAGAAGCCCTGGTCCTGGATCTAGAAGTCCGGGTCCTGCATCAAGGGGGGCCAGCAGGTCTGC
ATCACCTCTTCATCCACTTCTAGGAGGTATGAATCTAGAGTCTCCAACAGGAAGGCTGGAAGATGGGAAGAGCCAATGTC
ATCCACTGCCTCTTCCACCGGGTTCTCCTAACAGCCCTTCCTCTTTTTCACCGAGCACAAGGACTCCTGTTGCAACTGAA
AATGCAACTGTTCCAATGTCAAAATGGAAGAAAGGAAAGCTACTAGGAAGGGGAACTTTTGGACATGTGTACCTTGGATT
TAACAGATGTGTGCAATAAAAGAAGTCAGAGTTGTTTCAGATGATCAGACGTCAAAAGAATGTCTTAAGCAGCTGAACCA
GGAAATAAACTTGCTTAGTCAGCTTTCACATCCAAACATCGTCCGATATCATGGAAGTGAACTGAGTGAAGAAACACTTT
CAGTTTATTTAGAGTATGTCTCTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002529731.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] gb|EEF32660.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] 361 1e-125
  Manihot esculenta blastn  cassava4.1_005325m|PACid:17973662 1836 0.0
  FGENESH CDS blastn  scaffold06948_FGENESH71 12 exon (s) 692141 - 696652 2208 bp, chain - 1059 0.0
  Arabidopsis thaliana blastx  AT1G53570.1 | Symbols: MAP3KA, MAPKKK3 | mitogen-activated protein kinase kinase kinase 3 | chr1:19987391-19990733 FORWARD LENGTH=609 159 5e-66
  Populus trichocarpa blastx  POPTR_0007s04070.1|PACid:18243224 264 2e-96
  Vitis vinifera blastx  GSVIVT01026487001|PACid:17834182 228 5e-87
  Ricinus communis blastx  29691.m000286|PACid:16805903 361 1e-128
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: Contig00779_1_ORF1  Length: 107 aa
No hits reported.
Sequence: Contig00779_1_ORF2  Length: 55 aa
No hits reported.
Sequence: Contig00779_2_ORF2  Length: 60 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[1-60]T 4e-25 PD000001 Q6RFY3_LYCES_Q6RFY3;Q6RFY3_LYCES_Q6RFY3;
PS50011[1-60]T 10.365 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
PF07714[1-44]T 0.00014 PF07714 Pkinase_TyrPkinase_Tyr
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[1-59]T 9.1e-08 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR015748
Domain
Mitogen activated protein kinase kinase kinase 3
PTHR22986:SF64[1-60]T 4.8e-24 PTHR22986:SF64 MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3
noIPR
unintegrated
unintegrated
G3DSA:3.30.200.20[1-58]T 6.6e-07 G3DSA:3.30.200.20 no descriptionno description
PTHR22986[1-60]T 4.8e-24 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
Sequence: Contig00779_3_ORF2  Length: 264 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[242-261]T 0.0001 PD000001 Q6RFY4_NICBE_Q6RFY4;Q6RFY4_NICBE_Q6RFY4;
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[216-261]T 2.1e-05 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR015748
Domain
Mitogen activated protein kinase kinase kinase 3
PTHR22986:SF64[228-260]T 9.1e-10 PTHR22986:SF64 MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3MITOGEN ACTIVATED PROTEIN KINASE KINASE KINASE 3, MAPKKK3, MEKK3
noIPR
unintegrated
unintegrated
PTHR22986[228-260]T 9.1e-10 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
seg[29-40]? NA seg seg[53-72]? NA seg seg[90-115]? NA seg seg[142-181]? NA seg seg[207-224]? NA seg segseg
Sequence: Contig00779_4_ORF2  Length: 59 aa
noIPR
unintegrated
unintegrated
seg[38-49]? NA seg segseg
Sequence: Contig00779_5_ORF2  Length: 65 aa
noIPR
unintegrated
unintegrated
seg[44-65]? NA seg segseg
Sequence: Contig00779_5_ORF3  Length: 50 aa
noIPR
unintegrated
unintegrated
seg[2-42]? NA seg segseg
Sequence: Contig00779_5_ORF4  Length: 99 aa
noIPR
unintegrated
unintegrated
seg[62-81]? NA seg segseg
Sequence: Contig00779_6_ORF2  Length: 120 aa
noIPR
unintegrated
unintegrated
seg[11-33]? NA seg seg[94-108]? NA seg segseg