Sequence ID | ||
Sequence Length | 1064 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold01034 Scaffold01035 | |
Related probe ID of RIKEN ver.1 microarray | - (Scaffold01034) R_Mes01_000793 (Scaffold01035) |
>Contig00779 TTTTTCTCTCTGGAGAGTGCTCTCTGTACACGCGTTTCTATAGAGGAACGTATCTGCGTCTCCTCTTCTATTCTCTTAAT TCTTCCTGAGGTTTTATCGGATAAAAGATGCCTGCTTGGTGGGGGAAAAAGTCCTCCAGGAACAAGGAAGAGAGGCTGCA AGATAACCCAAATGGGAAAAACGATATTACCAAGAAGAAATCCACTAAAGAAAAGCGCAGGAGCCTTGATGAGGCCGTTT CTACCCGGAATTCGCCACGTGGGAGCAAAGATTTCGCGGGTGGGTCTTCCGGGTTTTCGGGTTTCGAGTCGGATTCGGCT TTGAAGAGAGGGCTTCCACTTCCTACGCCGTCTGGGTCTGGGAGTGATCATGGGATTGTTGGGGTTGGGTTGGGATCTGG GTCTGCTTCTGGTTCCATGTCCAGTGTGAGCTCTTCTGGGTCATCCGGTGAGGATCATCCAATTGCAAACGATCATAACA GTAGTCTTTTTGGTGGCTACAGAGGACATGGTGATATAAGGTTCAATGCGAGGTCAAGGAGCCCTGGTCCAGGATCAAGA AGTCCAGGTCCTGGGTCTAGAAGCCCTGGTCCTGGATCTAGAAGTCCGGGTCCTGCATCAAGGGGGGCCAGCAGGTCTGC ATCACCTCTTCATCCACTTCTAGGAGGTATGAATCTAGAGTCTCCAACAGGAAGGCTGGAAGATGGGAAGAGCCAATGTC ATCCACTGCCTCTTCCACCGGGTTCTCCTAACAGCCCTTCCTCTTTTTCACCGAGCACAAGGACTCCTGTTGCAACTGAA AATGCAACTGTTCCAATGTCAAAATGGAAGAAAGGAAAGCTACTAGGAAGGGGAACTTTTGGACATGTGTACCTTGGATT TAACAGATGTGTGCAATAAAAGAAGTCAGAGTTGTTTCAGATGATCAGACGTCAAAAGAATGTCTTAAGCAGCTGAACCA GGAAATAAACTTGCTTAGTCAGCTTTCACATCCAAACATCGTCCGATATCATGGAAGTGAACTGAGTGAAGAAACACTTT CAGTTTATTTAGAGTATGTCTCTG |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002529731.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] gb|EEF32660.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] | 361 | 1e-125 |
Manihot esculenta | blastn | cassava4.1_005325m|PACid:17973662 | 1836 | 0.0 |
FGENESH CDS | blastn | scaffold06948_FGENESH71 12 exon (s) 692141 - 696652 2208 bp, chain - | 1059 | 0.0 |
Arabidopsis thaliana | blastx | AT1G53570.1 | Symbols: MAP3KA, MAPKKK3 | mitogen-activated protein kinase kinase kinase 3 | chr1:19987391-19990733 FORWARD LENGTH=609 | 159 | 5e-66 |
Populus trichocarpa | blastx | POPTR_0007s04070.1|PACid:18243224 | 264 | 2e-96 |
Vitis vinifera | blastx | GSVIVT01026487001|PACid:17834182 | 228 | 5e-87 |
Ricinus communis | blastx | 29691.m000286|PACid:16805903 | 361 | 1e-128 |
InterProScan |
No hits found |
Sequence: Contig00779_1_ORF1 Length: 107 aa | |
No hits reported. |
Sequence: Contig00779_1_ORF2 Length: 55 aa | |
No hits reported. |
Sequence: Contig00779_2_ORF2 Length: 60 aa | ||||||||||
InterPro IPR000719 Domain |
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InterPro IPR001245 Domain |
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InterPro IPR011009 Domain |
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InterPro IPR015748 Domain |
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noIPR unintegrated |
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Sequence: Contig00779_3_ORF2 Length: 264 aa | ||||||||||
InterPro IPR000719 Domain |
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InterPro IPR011009 Domain |
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InterPro IPR015748 Domain |
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noIPR unintegrated |
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Sequence: Contig00779_4_ORF2 Length: 59 aa | |||||||
noIPR unintegrated |
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Sequence: Contig00779_5_ORF2 Length: 65 aa | |||||||
noIPR unintegrated |
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Sequence: Contig00779_5_ORF3 Length: 50 aa | |||||||
noIPR unintegrated |
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Sequence: Contig00779_5_ORF4 Length: 99 aa | |||||||
noIPR unintegrated |
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Sequence: Contig00779_6_ORF2 Length: 120 aa | |||||||
noIPR unintegrated |
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