Sequence ID | ||
Sequence Length | 958 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | Mapped | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold00240 Scaffold00241 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_000184 (Scaffold00240) R_Mes01_000185 (Scaffold00241) |
>Contig00178 GACGCACAGGAAAATCTTCCTAAGATTCCTTCAAATTCACATATATATGTCCTTCGCAGCTCAAATCCATACCTCCAATT GCTTCTCCAGGCGCCATCGTCTTATTGTTCGCCCACAGACAATAAGACAATGCTTGAGAAAGAATTTTTCACGGAGTATG GAGAGGCGAACCAGTACGAGATTCAAGAAGTAATTGGGAAGGGAAGCTATGGAGTGGTGGCCTCCGCCATAGATACTCAT ACCGGAGAGAAGGTAGCTATAAAGAAGATGACCAATATCTTTGAGCATGTCTCTGATGCTACGCGCATTCTGCGTGAGAT CAAGCTCCTCCGCCTCCTCAGACACCCTGATATTGTTGAAATCAAGCACATAATGCTTCCTCCATCGCCTAGAGAGTTCA AGGACATTTATGTCATTTTTGAATTGATGGAATCTGATCTTCACCAGGTTATTAAGTTGAATGATGATCTCACTCCTGAG CATCATCAGTTTTTCCTGTACCAGCTTCTTCGAGCTCTGAAATATATACACTCAGCGCATGTGTTTCATCGAGATTTGAA GCCAAAAAATATTCTTGCTAATGCAGACTGCAAGCTAAAGCTTTGTGATTTTGGGCTTGCTCGCGTGTCCTTTACCAATG CTCCATCTGCCATTTTTTGGACGGATTATGTGGCAACACGATGGTACCGAGCTCCTGAACTCTGTGGTTCCTTTTCCTCA AAGTACACTCCTGCTATTGATACCTGGAGCATAGGATGTATATTTGCCGAGTTGCTAACAGGGAAACCCTTGTTTCCTGG AAAAAATGTGGTGCATCAGCTGGATATCATAACTGATGTGCTTGGCACTCCTTCAGCAGAATCCATTGCACGGATTGGGA ATGACAAAGCTACGAAGTATTTGAATAGCATGAGATAAAAACGACCGATTCCTTTGTCAAGAAAATTCCAATGCTGAC |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002526023.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF36363.1| big map kinase/bmk, putative [Ricinus communis] | 533 | 1e-149 |
Manihot esculenta | blastn | cassava4.1_006140m|PACid:17972634 | 1584 | 0.0 |
FGENESH CDS | blastn | scaffold00318_FGENESH46 9 exon (s) 373095 - 378216 1497 bp, chain - | 1584 | 0.0 |
Arabidopsis thaliana | blastx | AT1G18150.3 | Symbols: ATMPK8 | Protein kinase superfamily protein | chr1:6244641-6247582 REVERSE LENGTH=589 | 483 | 1e-137 |
Populus trichocarpa | blastx | POPTR_0010s12240.3|PACid:18239797 | 509 | 1e-145 |
Vitis vinifera | blastx | GSVIVT01008408001|PACid:17821014 | 489 | 1e-138 |
Ricinus communis | blastx | 29816.m000682|PACid:16809594 | 533 | 1e-152 |
InterProScan |
GO:0004672
Molecular Function protein kinase activity |
GO:0005524
Molecular Function ATP binding |
GO:0006468
Biological Process protein amino acid phosphorylation |
Sequence: Contig00178_1_ORF1 Length: 305 aa | |||||||||||||||||||
InterPro IPR000719 Domain |
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InterPro IPR001245 Domain |
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InterPro IPR002290 Domain |
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InterPro IPR003527 Conserved_site |
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InterPro IPR011009 Domain |
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InterPro IPR017441 Conserved_site |
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InterPro IPR017442 Domain |
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noIPR unintegrated |
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Sequence: Contig00178_2_ORF1 Length: 63 aa | |
No hits reported. |
Sequence: Contig00178_2_ORF2 Length: 51 aa | |
No hits reported. |
Sequence: Contig00178_4_ORF2 Length: 156 aa | |
No hits reported. |
Sequence: Contig00178_6_ORF2 Length: 56 aa | |||||||
noIPR unintegrated |
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