Home > Keyword search > Contig00178

Summary
Sequence ID 
Sequence Length 958 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold00240
 Scaffold00241
Related probe ID of RIKEN ver.1 microarray  R_Mes01_000184 (Scaffold00240)
 R_Mes01_000185 (Scaffold00241)
 
 
Sequence
>Contig00178
GACGCACAGGAAAATCTTCCTAAGATTCCTTCAAATTCACATATATATGTCCTTCGCAGCTCAAATCCATACCTCCAATT
GCTTCTCCAGGCGCCATCGTCTTATTGTTCGCCCACAGACAATAAGACAATGCTTGAGAAAGAATTTTTCACGGAGTATG
GAGAGGCGAACCAGTACGAGATTCAAGAAGTAATTGGGAAGGGAAGCTATGGAGTGGTGGCCTCCGCCATAGATACTCAT
ACCGGAGAGAAGGTAGCTATAAAGAAGATGACCAATATCTTTGAGCATGTCTCTGATGCTACGCGCATTCTGCGTGAGAT
CAAGCTCCTCCGCCTCCTCAGACACCCTGATATTGTTGAAATCAAGCACATAATGCTTCCTCCATCGCCTAGAGAGTTCA
AGGACATTTATGTCATTTTTGAATTGATGGAATCTGATCTTCACCAGGTTATTAAGTTGAATGATGATCTCACTCCTGAG
CATCATCAGTTTTTCCTGTACCAGCTTCTTCGAGCTCTGAAATATATACACTCAGCGCATGTGTTTCATCGAGATTTGAA
GCCAAAAAATATTCTTGCTAATGCAGACTGCAAGCTAAAGCTTTGTGATTTTGGGCTTGCTCGCGTGTCCTTTACCAATG
CTCCATCTGCCATTTTTTGGACGGATTATGTGGCAACACGATGGTACCGAGCTCCTGAACTCTGTGGTTCCTTTTCCTCA
AAGTACACTCCTGCTATTGATACCTGGAGCATAGGATGTATATTTGCCGAGTTGCTAACAGGGAAACCCTTGTTTCCTGG
AAAAAATGTGGTGCATCAGCTGGATATCATAACTGATGTGCTTGGCACTCCTTCAGCAGAATCCATTGCACGGATTGGGA
ATGACAAAGCTACGAAGTATTTGAATAGCATGAGATAAAAACGACCGATTCCTTTGTCAAGAAAATTCCAATGCTGAC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002526023.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF36363.1| big map kinase/bmk, putative [Ricinus communis] 533 1e-149
  Manihot esculenta blastn  cassava4.1_006140m|PACid:17972634 1584 0.0
  FGENESH CDS blastn  scaffold00318_FGENESH46 9 exon (s) 373095 - 378216 1497 bp, chain - 1584 0.0
  Arabidopsis thaliana blastx  AT1G18150.3 | Symbols: ATMPK8 | Protein kinase superfamily protein | chr1:6244641-6247582 REVERSE LENGTH=589 483 1e-137
  Populus trichocarpa blastx  POPTR_0010s12240.3|PACid:18239797 509 1e-145
  Vitis vinifera blastx  GSVIVT01008408001|PACid:17821014 489 1e-138
  Ricinus communis blastx  29816.m000682|PACid:16809594 533 1e-152
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: Contig00178_1_ORF1  Length: 305 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[59-288]T 2e-110 PD000001 Q6L5F7_EEEEE_Q6L5F7;Q6L5F7_EEEEE_Q6L5F7;
PS50011[59-305]T 40.103 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR001245
Domain
Tyrosine protein kinase
SM00219[59-301]T 1.2e-10 SM00219 no descriptionno description
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[59-301]T 2.1e-69 SM00220 no descriptionno description
InterPro
IPR003527
Conserved_site
MAP kinase, conserved site
PS01351[94-197]T 8e-5 PS01351 MAPKMAPK
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[50-292]T 3e-72 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017441
Conserved_site
Protein kinase ATP binding, conserved site
PS00107[65-89]T 8e-5 PS00107 PROTEIN_KINASE_ATPPROTEIN_KINASE_ATP
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[59-284]T 9.9e-70 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:1.10.510.10[132-292]T 4.9e-49 G3DSA:1.10.510.10 no descriptionno description
G3DSA:3.30.200.20[52-129]T 0.00094 G3DSA:3.30.200.20 no descriptionno description
PTHR11295[37-281]T 1.4e-180 PTHR11295 CDC2, MAP KINASE-RELATEDCDC2, MAP KINASE-RELATED
PTHR11295:SF69[37-281]T 1.4e-180 PTHR11295:SF69 MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATEDMITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATED
seg[102-114]? NA seg segseg
Sequence: Contig00178_2_ORF1  Length: 63 aa
No hits reported.
Sequence: Contig00178_2_ORF2  Length: 51 aa
No hits reported.
Sequence: Contig00178_4_ORF2  Length: 156 aa
No hits reported.
Sequence: Contig00178_6_ORF2  Length: 56 aa
noIPR
unintegrated
unintegrated
seg[23-35]? NA seg segseg