Home > Keyword search > CK652606

Summary
Sequence ID CK652606
Sequence Length 452 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Corresponding scaffold  -
Related probe ID of RIKEN ver.1 microarray  R_Mes01_015302 (CK652606)
 
 
Sequence
>CK652606
GAGCTGTCATCTCATCAACGGTGATGGAGATATAGGCACACTCAGGCAGGTTCATGTGGTGTCTGGACTTCCTGCTGAGT
CAAGTACTGAGAGACTTGAGATTCTTGATGATGAACGTCATGTCTTGAGCTTTAGCGTGATTGGCGGCAACCACCGGCTA
AATAATTACCGATCAGTGACCACGCTCCACGCTTCTCCGGGTGAAAACGGTACGGTTGTTATTGAATCATATGTGGTTGA
TATACCGGCAGGGAATACAAAGGAAGATACATGTAGCTTCGCCGATACAATTGTACGGTGCAACTTGGAATCTCTGGCTC
AGATTTCTGAGAACATGGCCAAGAACACCCAGATAAAGATATCATCTCCATCGTCATCATCATCTTGAATTGATTGTTTT
GAAATGGGTTCTTTCATAAATTTTTTGTTTTCCATTCAGGTTTGGATTTGAT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002520792.1| conserved hypothetical protein [Ricinus communis] gb|EEF41501.1| conserved hypothetical protein [Ricinus communis] 207 4e-52
  Manihot esculenta blastn  cassava4.1_034305m|PACid:17964116 753 0.0
  FGENESH CDS blastn  scaffold05009_FGENESH12 1 exon (s) 83953 - 84615 663 bp, chain - 753 0.0
  Arabidopsis thaliana blastx  AT2G38310.1 | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050251-16050874 FORWARD LENGTH=207 180 4e-46
  Populus trichocarpa blastx  POPTR_0010s19120.1|PACid:18239920 207 2e-54
  Vitis vinifera blastx  GSVIVT01013161001|PACid:17824491 145 6e-36
  Ricinus communis blastx  29729.m002290|PACid:16806939 207 1e-54
 
 
Gene Ontology 
InterProScan
GO:0006952
Biological Process
defense response
GO:0009607
Biological Process
response to biotic stimulus
 
 
InterProScan result 
Sequence: CK652606_2_ORF1  Length: 128 aa
InterPro
IPR000916
Family
Bet v I allergen
PD000531[1-89]T 0.0001 PD000531 Q945E9_ORYSA_Q945E9;Q945E9_ORYSA_Q945E9;
noIPR
unintegrated
unintegrated
G3DSA:3.30.530.20[1-61]T 6.6e-06 G3DSA:3.30.530.20 no descriptionno description
seg[121-128]? NA seg segseg
SSF55961[1-111]T 1.7e-24 SSF55961 Bet v1-likeBet v1-like
Sequence: CK652606_3_ORF2  Length: 58 aa
noIPR
unintegrated
unintegrated
seg[4-15]? NA seg segseg
Sequence: CK652606_4_ORF2  Length: 50 aa
No hits reported.
Sequence: CK652606_6_ORF2  Length: 64 aa
No hits reported.