Summary
| Sequence ID | CK648921 | |
| Sequence Length | 503 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | Mapped | |
| Gbrowse Ptr | Mapped | |
| Gbrowse Vvi | Mapped | |
| Gbrowse Ath | Mapped | |
| Corresponding scaffold | - | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_014835 (CK648921) |
| >CK648921 ATCAAGCACTCGTTCCTACACTCAATACTTTGCAGAGTCTTTGATTGCTGAAGCAGAGAGAGACGATAAAGTCGTAGCCA TCCATGCTGCTATGGGAGGAGGCACAGGGCTTAATTTGTTCCAAAAACACTTCCCAGATAGATGTTTTGATGTTGGGATA GCAGAACAACATGCTGTTACCTTTGCTGCTGGTCTAGCAACTGAAGGCCTAAAACCTTTCTGTGCTATTTACTCTTCTTT CCTTCAAAGAGGTTATGATCAGGTGGTACATGATGTGGACCTTCAAAAGCTTCCAGTTAGATTTGCAATAGACAGGGCTG GCCTAGTTGGTGCAGATGGTCCAACCCATTGTGGAGCCTTTGATGTTACTTACATGGCTTGTTTACCTAACATGGTAGTC ATGGCTCCTTCTGATGAGACTGAACTGATGCACATGGTGGCTACAGCGGCAGCCATCGATGACCGCCCCAGTTGCTTTAG GTATCCTCGAAGAAATGGAATTG |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | ref|XP_002533688.1| 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis] gb|EEF28696.1| 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis] | 330 | 5e-89 |
| Manihot esculenta | blastn | cassava4.1_002457m|PACid:17962274 | 989 | 0.0 |
| FGENESH CDS | blastn | scaffold00455_FGENESH11 9 exon (s) 447146 - 450109 2187 bp, chain - | 989 | 0.0 |
| Arabidopsis thaliana | blastx | AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717 | 299 | 6e-82 |
| Populus trichocarpa | blastx | POPTR_0007s09490.1|PACid:18243563 | 318 | 1e-87 |
| Vitis vinifera | blastx | GSVIVT01029112001|PACid:17836039 | 322 | 6e-89 |
| Ricinus communis | blastx | 27506.m000052|PACid:16798559 | 330 | 2e-91 |
| InterProScan |
| No hits found |
| Sequence: CK648921_2_ORF1 Length: 167 aa | ||||||||||||||||
| InterPro IPR005475 Domain |
| |||||||||||||||
| noIPR unintegrated |
| |||||||||||||||
![[2-165]T 4.9e-64 PF02779 Transket_pyr](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
![[110-126]T 8e-5 PS00802 TRANSKETOLASE_2](http://pmix.psc.riken.jp/img/interpro/P.gif){kind=small}
![[1-165]T 5.2e-51 G3DSA:3.40.50.970 no description](http://pmix.psc.riken.jp/img/interpro/X2.gif){kind=small}
![[32-167]T 1.5e-85 PTHR11624 DEHYDROGENASE RELATED](http://pmix.psc.riken.jp/img/interpro/X4.gif){kind=small}
![[1-165]T 3.4e-59 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)](http://pmix.psc.riken.jp/img/interpro/B.gif){kind=small}
| Sequence: CK648921_4_ORF2 Length: 68 aa | |||||||
| noIPR unintegrated |
| ||||||
![[51-61]? NA seg seg](http://pmix.psc.riken.jp/img/interpro/G.gif){kind=small}
| Sequence: CK648921_5_ORF2 Length: 63 aa | |
| No hits reported. | |
