Sequence ID | CAS01_047_B01.r (DB953602) | |
Sequence Length | 533 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | Mapped | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold06986 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_005478 (Scaffold06986) |
>CAS01_047_B01.r CAATGACTTTCTCCTCATCCATGTCTGTTGTAGAATACTACCTGAGGAAACGTTTTCCAGTTCCTTATGCTGTTTACTTC ATCGACACGGCTACACTTGCAGCCTTAATAGGGCAGCACATAGTGAGAAGATTGATCATTATGTTTGGAAGGGCATCCCT TATCATCTTCATCCTTGCTTTCACCATTTTTGTTAGTGCAATTTCACTCGGCGGCGTTGGCATATCAAATATGATATGGA AGATTAAGCATAACGAATACATGGGATTTGAGAACCTCTGCAAATATGAATGATAGTTCTGTGTTCAAGGTTCCCAGATG CTGTAATGATTTGTTGATGCTATAACATGGTTTGGGCAAATTCTTAGGCGGCTATAACCGTTCTATGTATAAGGGTTGTA TTATGACTATTGATTATGGTAGGTTTCATGTAGTTCATATGCAACCATTATATTCACCACTGTTGTATGGAATAATTTTT CGTGTTGGTGAGAGCAAGGGATGATCACCAACTGGTTTTATTTCTCTTCTTTT |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002516571.1| conserved hypothetical protein [Ricinus communis] gb|EEF45912.1| conserved hypothetical protein [Ricinus communis] | 180 | 7e-44 |
Manihot esculenta | blastn | cassava4.1_006911m|PACid:17982313 | 517 | 1e-146 |
FGENESH CDS | blastn | scaffold09576_FGENESH19 12 exon (s) 239688 - 243722 1416 bp, chain - | 517 | 1e-146 |
Arabidopsis thaliana | blastx | AT2G25737.1 | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476 | 149 | 1e-36 |
Populus trichocarpa | blastx | POPTR_0006s25880.1|PACid:18212575 | 157 | 3e-39 |
Vitis vinifera | blastx | GSVIVT01035669001|PACid:17840790 | 158 | 2e-39 |
Ricinus communis | blastx | 29794.m003451|PACid:16808810 | 180 | 3e-46 |
InterProScan |
No hits found |
Sequence: CAS01_047_B01.r_1_ORF2 Length: 52 aa | |
No hits reported. |
Sequence: CAS01_047_B01.r_2_ORF1 Length: 64 aa | |
No hits reported. |
Sequence: CAS01_047_B01.r_3_ORF1 Length: 96 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_047_B01.r_5_ORF2 Length: 76 aa | |
No hits reported. |