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Summary
Sequence ID CAS01_047_B01.r (DB953602)
Sequence Length 533 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold06986
Related probe ID of RIKEN ver.1 microarray  R_Mes01_005478 (Scaffold06986)
 
 
Sequence
>CAS01_047_B01.r
CAATGACTTTCTCCTCATCCATGTCTGTTGTAGAATACTACCTGAGGAAACGTTTTCCAGTTCCTTATGCTGTTTACTTC
ATCGACACGGCTACACTTGCAGCCTTAATAGGGCAGCACATAGTGAGAAGATTGATCATTATGTTTGGAAGGGCATCCCT
TATCATCTTCATCCTTGCTTTCACCATTTTTGTTAGTGCAATTTCACTCGGCGGCGTTGGCATATCAAATATGATATGGA
AGATTAAGCATAACGAATACATGGGATTTGAGAACCTCTGCAAATATGAATGATAGTTCTGTGTTCAAGGTTCCCAGATG
CTGTAATGATTTGTTGATGCTATAACATGGTTTGGGCAAATTCTTAGGCGGCTATAACCGTTCTATGTATAAGGGTTGTA
TTATGACTATTGATTATGGTAGGTTTCATGTAGTTCATATGCAACCATTATATTCACCACTGTTGTATGGAATAATTTTT
CGTGTTGGTGAGAGCAAGGGATGATCACCAACTGGTTTTATTTCTCTTCTTTT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002516571.1| conserved hypothetical protein [Ricinus communis] gb|EEF45912.1| conserved hypothetical protein [Ricinus communis] 180 7e-44
  Manihot esculenta blastn  cassava4.1_006911m|PACid:17982313 517 1e-146
  FGENESH CDS blastn  scaffold09576_FGENESH19 12 exon (s) 239688 - 243722 1416 bp, chain - 517 1e-146
  Arabidopsis thaliana blastx  AT2G25737.1 | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476 149 1e-36
  Populus trichocarpa blastx  POPTR_0006s25880.1|PACid:18212575 157 3e-39
  Vitis vinifera blastx  GSVIVT01035669001|PACid:17840790 158 2e-39
  Ricinus communis blastx  29794.m003451|PACid:16808810 180 3e-46
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_047_B01.r_1_ORF2  Length: 52 aa
No hits reported.
Sequence: CAS01_047_B01.r_2_ORF1  Length: 64 aa
No hits reported.
Sequence: CAS01_047_B01.r_3_ORF1  Length: 96 aa
noIPR
unintegrated
unintegrated
PTHR14255[1-96]T 1.4e-23 PTHR14255 ATP-DEPENDENT PROTEASE (CEREBLON)ATP-DEPENDENT PROTEASE (CEREBLON)
Sequence: CAS01_047_B01.r_5_ORF2  Length: 76 aa
No hits reported.