Sequence ID | CAS01_041_L05.r (DB951861) | |
Sequence Length | 293 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | - | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold11569 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_009189 (Scaffold11569) |
>CAS01_041_L05.r GTAAGCAGCACCAACTCCAATGCCAGTAAATCCAGCCTCAGTAATTGGAGTATCAAGAACCCTTTCTGGACCATACTTCT CCAGGAGCCCTTTAGTTATCTTATATGCACCCTGATATTCCCCAACCTCTTCTCCCATCAAAAAAACTTTAGGATCCGCA GACATTTCCTCGTCGAGAGCAGAGTTCAGTGCATCTCGAACAGTCATCTCTTTAGCGGCGGATGAGTAACCTCTCCATAC TGAAGCTGCGGGCCGAATATAATTCAGGGACATCCCAAAAGCTTTTTGCCTTA |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002512633.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF50085.1| pyruvate dehydrogenase, putative [Ricinus communis] | 172 | 1e-41 |
Manihot esculenta | blastn | cassava4.1_012364m|PACid:17993242 | 541 | 1e-154 |
FGENESH CDS | blastn | scaffold02264_FGENESH41 14 exon (s) 271498 - 274647 1116 bp, chain - | 418 | 1e-116 |
Arabidopsis thaliana | blastx | AT5G50850.1 | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363 | 146 | 4e-36 |
Populus trichocarpa | blastx | POPTR_0001s13350.1|PACid:18238270 | 172 | 5e-44 |
Vitis vinifera | blastx | GSVIVT01000944001|PACid:17817263 | 162 | 2e-41 |
Ricinus communis | blastx | 30128.m009036|PACid:16818618 | 172 | 3e-44 |
InterProScan |
No hits found |
Sequence: CAS01_041_L05.r_1_ORF1 Length: 74 aa | |||||||
noIPR unintegrated |
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Sequence: CAS01_041_L05.r_4_ORF1 Length: 97 aa | ||||||||||||||||
InterPro IPR005475 Domain |
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noIPR unintegrated |
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