Home > Keyword search > CAS01_041_L05.r

Summary
Sequence ID CAS01_041_L05.r (DB951861)
Sequence Length 293 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold11569
Related probe ID of RIKEN ver.1 microarray  R_Mes01_009189 (Scaffold11569)
 
 
Sequence
>CAS01_041_L05.r
GTAAGCAGCACCAACTCCAATGCCAGTAAATCCAGCCTCAGTAATTGGAGTATCAAGAACCCTTTCTGGACCATACTTCT
CCAGGAGCCCTTTAGTTATCTTATATGCACCCTGATATTCCCCAACCTCTTCTCCCATCAAAAAAACTTTAGGATCCGCA
GACATTTCCTCGTCGAGAGCAGAGTTCAGTGCATCTCGAACAGTCATCTCTTTAGCGGCGGATGAGTAACCTCTCCATAC
TGAAGCTGCGGGCCGAATATAATTCAGGGACATCCCAAAAGCTTTTTGCCTTA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002512633.1| pyruvate dehydrogenase, putative [Ricinus communis] gb|EEF50085.1| pyruvate dehydrogenase, putative [Ricinus communis] 172 1e-41
  Manihot esculenta blastn  cassava4.1_012364m|PACid:17993242 541 1e-154
  FGENESH CDS blastn  scaffold02264_FGENESH41 14 exon (s) 271498 - 274647 1116 bp, chain - 418 1e-116
  Arabidopsis thaliana blastx  AT5G50850.1 | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363 146 4e-36
  Populus trichocarpa blastx  POPTR_0001s13350.1|PACid:18238270 172 5e-44
  Vitis vinifera blastx  GSVIVT01000944001|PACid:17817263 162 2e-41
  Ricinus communis blastx  30128.m009036|PACid:16818618 172 3e-44
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_041_L05.r_1_ORF1  Length: 74 aa
noIPR
unintegrated
unintegrated
seg[2-17]? NA seg segseg
Sequence: CAS01_041_L05.r_4_ORF1  Length: 97 aa
InterPro
IPR005475
Domain
Transketolase, central region
PF02779[27-96]T 6.9e-24 PF02779 Transket_pyrTransket_pyr
noIPR
unintegrated
unintegrated
G3DSA:3.40.50.970[15-97]T 2.4e-24 G3DSA:3.40.50.970 no descriptionno description
PTHR11624[62-97]T 4.3e-21 PTHR11624 DEHYDROGENASE RELATEDDEHYDROGENASE RELATED
PTHR11624:SF11[62-97]T 4.3e-21 PTHR11624:SF11 PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNITPYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT
SSF52518[25-97]T 6.9e-22 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)Thiamin diphosphate-binding fold (THDP-binding)