Sequence ID | CAS01_040_B07.r (DB951376) | |
Sequence Length | 569 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | - | |
Gbrowse Ptr | - | |
Gbrowse Vvi | Mapped | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold11469 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_009092 (Scaffold11469) |
>CAS01_040_B07.r GGAAATGCAACGGCAACAGAGCATGTTTTTTTTTTTTAAAGGGAACAAGTCTACTCGTAGCTTATTGAAGAGTGCGAGCA TTAGTGCTTCCAAGTGTATAGGATCAAGAAAAGGAACAGATACAGAGGATACAGTTGGTGAGGTAAGTGATGAGTCAGTC AACGTCGACTTGTCTCAGAAGGTTGCAACCCTCCATGCCTGAGAATTATCATAATCTCTTCTGGAGATTCAGATGGCTTA ACCTCGTGGTCTGCCCATTTTCCTCCACTTTGTGATCAGAGGATGTTTCTCAGTGACCTACAAGGAGGATCACGTAGAAG GTAACATGACTTCGTTGGCACCTGTGTTGCTAAATTACAGTGAAGAGATGCTTTCTTGTTAATGGCTCCATCTGTAATCT TTTGTATCTGGGCACAGTATCTGTATTTTGGACAGACAGCATAGTAACTTTTTTCAGTGTGATGCCAGGAAAGAACAGTT TTGGTCTGAAGAGTGGTATTTTCTTAATGTAATGATTGTTTATAGGATATTTGGATTTATGCATTGTTGGATTAATCTTG GCTTAATAT |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ef|XP_002322093.1| predicted protein [Populus trichocarpa] >gi|... 60 2e-07 >ref|XP_002322093.1| predicted protein [Populus trichocarpa] gb|EEF06220.1| predicted protein [Populus trichocarpa] | 60.1 | 2e-07 |
Manihot esculenta | blastn | - | - | - |
FGENESH CDS | blastn | - | - | - |
Arabidopsis thaliana | blastx | AT1G18150.3 | Symbols: ATMPK8 | Protein kinase superfamily protein | chr1:6244641-6247582 REVERSE LENGTH=589 | 57.8 | 5e-09 |
Populus trichocarpa | blastx | POPTR_0015s04380.1|PACid:18233390 | 60.1 | 1e-09 |
Vitis vinifera | blastx | GSVIVT01008408001|PACid:17821014 | 50.8 | 4e-07 |
Ricinus communis | blastx | 28097.m000052|PACid:16799928 | 52.4 | 1e-07 |
InterProScan |
No hits found |
Sequence: CAS01_040_B07.r_1_ORF2 Length: 56 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_040_B07.r_2_ORF1 Length: 66 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_040_B07.r_2_ORF2 Length: 57 aa | |
No hits reported. |
Sequence: CAS01_040_B07.r_3_ORF2 Length: 52 aa | |
No hits reported. |
Sequence: CAS01_040_B07.r_4_ORF2 Length: 58 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_040_B07.r_5_ORF2 Length: 70 aa | |
No hits reported. |
Sequence: CAS01_040_B07.r_6_ORF2 Length: 75 aa | |
No hits reported. |