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Summary
Sequence ID CAS01_040_B07.r (DB951376)
Sequence Length 569 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold11469
Related probe ID of RIKEN ver.1 microarray  R_Mes01_009092 (Scaffold11469)
 
 
Sequence
>CAS01_040_B07.r
GGAAATGCAACGGCAACAGAGCATGTTTTTTTTTTTTAAAGGGAACAAGTCTACTCGTAGCTTATTGAAGAGTGCGAGCA
TTAGTGCTTCCAAGTGTATAGGATCAAGAAAAGGAACAGATACAGAGGATACAGTTGGTGAGGTAAGTGATGAGTCAGTC
AACGTCGACTTGTCTCAGAAGGTTGCAACCCTCCATGCCTGAGAATTATCATAATCTCTTCTGGAGATTCAGATGGCTTA
ACCTCGTGGTCTGCCCATTTTCCTCCACTTTGTGATCAGAGGATGTTTCTCAGTGACCTACAAGGAGGATCACGTAGAAG
GTAACATGACTTCGTTGGCACCTGTGTTGCTAAATTACAGTGAAGAGATGCTTTCTTGTTAATGGCTCCATCTGTAATCT
TTTGTATCTGGGCACAGTATCTGTATTTTGGACAGACAGCATAGTAACTTTTTTCAGTGTGATGCCAGGAAAGAACAGTT
TTGGTCTGAAGAGTGGTATTTTCTTAATGTAATGATTGTTTATAGGATATTTGGATTTATGCATTGTTGGATTAATCTTG
GCTTAATAT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ef|XP_002322093.1| predicted protein [Populus trichocarpa] >gi|... 60 2e-07 >ref|XP_002322093.1| predicted protein [Populus trichocarpa] gb|EEF06220.1| predicted protein [Populus trichocarpa] 60.1 2e-07
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx  AT1G18150.3 | Symbols: ATMPK8 | Protein kinase superfamily protein | chr1:6244641-6247582 REVERSE LENGTH=589 57.8 5e-09
  Populus trichocarpa blastx  POPTR_0015s04380.1|PACid:18233390 60.1 1e-09
  Vitis vinifera blastx  GSVIVT01008408001|PACid:17821014 50.8 4e-07
  Ricinus communis blastx  28097.m000052|PACid:16799928 52.4 1e-07
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_040_B07.r_1_ORF2  Length: 56 aa
noIPR
unintegrated
unintegrated
seg[18-28]? NA seg segseg
Sequence: CAS01_040_B07.r_2_ORF1  Length: 66 aa
noIPR
unintegrated
unintegrated
seg[20-35]? NA seg segseg
Sequence: CAS01_040_B07.r_2_ORF2  Length: 57 aa
No hits reported.
Sequence: CAS01_040_B07.r_3_ORF2  Length: 52 aa
No hits reported.
Sequence: CAS01_040_B07.r_4_ORF2  Length: 58 aa
noIPR
unintegrated
unintegrated
seg[3-21]? NA seg segseg
Sequence: CAS01_040_B07.r_5_ORF2  Length: 70 aa
No hits reported.
Sequence: CAS01_040_B07.r_6_ORF2  Length: 75 aa
No hits reported.