Sequence ID | CAS01_040_B07.f (DB934189) | |
Sequence Length | 527 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold11469 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_009092 (Scaffold11469) |
>CAS01_040_B07.f AAAAGCCATACCCAAAAAAGGAAGCCATAAACCAAAAATACAGAGAAAATAGTGAGGTGGGCAAATGCTAGAATCGAGTG GCTGTGGATTAAGGAGCCTGCGATTTATATGGGGAGCGGAACTTTTGTGGACGGCGTTCGTCGTTGGTTTCAACGCCGCA ACACTTCTGCATCGTCATCATCTGCCAGTAATAATTTTGTGAATGGTGCAGATACTGATCTCAGTGGACACCCACAATCA TCTGCTACTAGTGTGCATGAAAGGGGAAGAAAGGAAGAGGGTGGTGAGCTGGAGAATCAGTTGACTGTTATTGAAGATTT TGATTTCTCTGGATTAAAGCACATTAGAGTACCCAAACGAAGTACCCATTTTGCTTTTGGCTCTACTACTACCATCGGTC CACCCAAGAAGGGTTCTGCTGAAGCAGAATTCTTCACCGAGTATGGAGAGGCAAGTAGATATCANATACAAGAAGTCGTT GGGACAGGCAGTTATTGGTGTTGTTTGCTCTGCAATTGACACTCATA |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002534166.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF28215.1| big map kinase/bmk, putative [Ricinus communis] | 132 | 5e-30 |
Manihot esculenta | blastn | cassava4.1_003987m|PACid:17986942 | 809 | 0.0 |
FGENESH CDS | blastn | scaffold02572_FGENESH2 11 exon (s) 7316 - 13275 1485 bp, chain - | 601 | 1e-171 |
Arabidopsis thaliana | blastx | AT1G18150.3 | Symbols: ATMPK8 | Protein kinase superfamily protein | chr1:6244641-6247582 REVERSE LENGTH=589 | 95.9 | 5e-21 |
Populus trichocarpa | blastx | POPTR_0015s04380.1|PACid:18233390 | 122 | 1e-28 |
Vitis vinifera | blastx | GSVIVT01008408001|PACid:17821014 | 93.2 | 1e-20 |
Ricinus communis | blastx | 28097.m000052|PACid:16799928 | 132 | 2e-32 |
InterProScan |
No hits found |
Sequence: CAS01_040_B07.f_1_ORF2 Length: 162 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_040_B07.f_2_ORF2 Length: 63 aa | |||||||
noIPR unintegrated |
|
Sequence: CAS01_040_B07.f_4_ORF1 Length: 62 aa | |
No hits reported. |
Sequence: CAS01_040_B07.f_4_ORF2 Length: 58 aa | |
No hits reported. |
Sequence: CAS01_040_B07.f_6_ORF2 Length: 54 aa | |
No hits reported. |