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Summary
Sequence ID CAS01_040_B07.f (DB934189)
Sequence Length 527 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold11469
Related probe ID of RIKEN ver.1 microarray  R_Mes01_009092 (Scaffold11469)
 
 
Sequence
>CAS01_040_B07.f
AAAAGCCATACCCAAAAAAGGAAGCCATAAACCAAAAATACAGAGAAAATAGTGAGGTGGGCAAATGCTAGAATCGAGTG
GCTGTGGATTAAGGAGCCTGCGATTTATATGGGGAGCGGAACTTTTGTGGACGGCGTTCGTCGTTGGTTTCAACGCCGCA
ACACTTCTGCATCGTCATCATCTGCCAGTAATAATTTTGTGAATGGTGCAGATACTGATCTCAGTGGACACCCACAATCA
TCTGCTACTAGTGTGCATGAAAGGGGAAGAAAGGAAGAGGGTGGTGAGCTGGAGAATCAGTTGACTGTTATTGAAGATTT
TGATTTCTCTGGATTAAAGCACATTAGAGTACCCAAACGAAGTACCCATTTTGCTTTTGGCTCTACTACTACCATCGGTC
CACCCAAGAAGGGTTCTGCTGAAGCAGAATTCTTCACCGAGTATGGAGAGGCAAGTAGATATCANATACAAGAAGTCGTT
GGGACAGGCAGTTATTGGTGTTGTTTGCTCTGCAATTGACACTCATA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002534166.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF28215.1| big map kinase/bmk, putative [Ricinus communis] 132 5e-30
  Manihot esculenta blastn  cassava4.1_003987m|PACid:17986942 809 0.0
  FGENESH CDS blastn  scaffold02572_FGENESH2 11 exon (s) 7316 - 13275 1485 bp, chain - 601 1e-171
  Arabidopsis thaliana blastx  AT1G18150.3 | Symbols: ATMPK8 | Protein kinase superfamily protein | chr1:6244641-6247582 REVERSE LENGTH=589 95.9 5e-21
  Populus trichocarpa blastx  POPTR_0015s04380.1|PACid:18233390 122 1e-28
  Vitis vinifera blastx  GSVIVT01008408001|PACid:17821014 93.2 1e-20
  Ricinus communis blastx  28097.m000052|PACid:16799928 132 2e-32
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_040_B07.f_1_ORF2  Length: 162 aa
noIPR
unintegrated
unintegrated
seg[46-53]? NA seg seg[77-88]? NA seg segseg
Sequence: CAS01_040_B07.f_2_ORF2  Length: 63 aa
noIPR
unintegrated
unintegrated
seg[12-18]? NA seg segseg
Sequence: CAS01_040_B07.f_4_ORF1  Length: 62 aa
No hits reported.
Sequence: CAS01_040_B07.f_4_ORF2  Length: 58 aa
No hits reported.
Sequence: CAS01_040_B07.f_6_ORF2  Length: 54 aa
No hits reported.