Home > Keyword search > CAS01_033_H01.f

Summary
Sequence ID CAS01_033_H01.f (DB931774)
Sequence Length 620 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold11108
Related probe ID of RIKEN ver.1 microarray  R_Mes01_008737 (Scaffold11108)
 
 
Sequence
>CAS01_033_H01.f
GAAGCGTTTCCGCTTTTCTCATCCGAAGACTTTCAACGACTCTCCTCTCTCTTCCACTTCCTGATCATGAAGAAGGGGTC
CTTAAACCCTAACATCAAGCTCAAGCTCTCTCTCCCTCCTCCCGATGAAGTTTCCTTCGCCAAGTTCCTAACCCAAAGCG
GTACATTTATGGATGGTGATTTGCTTGTCAATCGAGATGGAGTTCGAATTGTCTCGCAAAGCGAACCCGAAGCTCCACCT
CCTATTAAACCATCGGACAACCAGTTGAATTTAGCAGACATAGACACCATTAAGGTCATTGGGAAGGGAAGCAGTGGAAT
TGTGCAACTGGTGCAACATAAATGGACAGGCCAGTTTTTTGCATTAAAGGTTATACAAATGAATATTGAGGAGAATGCAA
GGAAAGCAATTGCCAAGGAACTAAAAATTAATCAATCAGCTCAATGTCCATATGTTGTTATGTGCTACCAGTCTTTCTAT
GACAATGGTGCCATTTCAATCATCCTAGAGTATATGGATGGTGGATCTTTGGCAGATCTTCTGAAAAAGGTTAAAACAAT
TCCAGAACCATATCTTGCTGCCATCTGTAAGCAGGTGCTCAAGGGTTTGTTGTATCTTCA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002514093.1| mitogen activated protein kinase kinase, mapkk2, putative [Ricinus communis] gb|EEF48047.1| mitogen activated protein kinase kinase, mapkk2, putative [Ricinus communis] 348 2e-94
  Manihot esculenta blastn  cassava4.1_010578m|PACid:17990635 632 0.0
  FGENESH CDS blastn  scaffold07318_FGENESH22 8 exon (s) 179534 - 181654 990 bp, chain + 765 0.0
  Arabidopsis thaliana blastx  AT4G29810.1 | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase 2 | chr4:14593299-14595241 REVERSE LENGTH=363 265 2e-71
  Populus trichocarpa blastx  POPTR_0018s05420.2|PACid:18214792 333 5e-92
  Vitis vinifera blastx  GSVIVT01015155001|PACid:17825956 295 1e-80
  Ricinus communis blastx  29912.m005307|PACid:16813186 348 8e-97
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: CAS01_033_H01.f_1_ORF1  Length: 206 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[95-206]T 2e-48 PD000001 O48616_LYCES_O48616;O48616_LYCES_O48616;
PS50011[94-206]T 16.839 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR002290
Domain
Serine/threonine protein kinase
SM00220[94-206]T 0.00022 SM00220 no descriptionno description
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[80-206]T 9e-29 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017441
Conserved_site
Protein kinase ATP binding, conserved site
PS00107[100-123]T 8e-5 PS00107 PROTEIN_KINASE_ATPPROTEIN_KINASE_ATP
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[94-206]T 5.9e-23 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:3.30.200.20[77-173]T 7.8e-24 G3DSA:3.30.200.20 no descriptionno description
PTHR22986[81-206]T 1.3e-87 PTHR22986 MAPKK-RELATED SERINE/THREONINE PROTEIN KINASESMAPKK-RELATED SERINE/THREONINE PROTEIN KINASES
PTHR22986:SF39[81-206]T 1.3e-87 PTHR22986:SF39 MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPKK2
Sequence: CAS01_033_H01.f_6_ORF1  Length: 132 aa
noIPR
unintegrated
unintegrated
seg[1-18]? NA seg segseg