Home > Keyword search > CAS01_032_K15.f

Summary
Sequence ID CAS01_032_K15.f (DB931485)
Sequence Length 571 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold05684
Related probe ID of RIKEN ver.1 microarray  R_Mes01_004434 (Scaffold05684)
 
 
Sequence
>CAS01_032_K15.f
GGAGAGTGCTCTCTGTACACGCGTTTCTATAGAGGAACGTATCTGCGTCTCCTCTTCTATTCTCTTAATTCTTCCTGAGG
TTTTATCGGATAAAAGATGCCTGCTTGGTGGGGGAAAAAGTCCTCCAGGAACAAGGAAGAGAGGCTGCAAGATAACCCAA
ATGGGAAAAACGATATTACCAAGAAGAAATCCACTAAAGAAAAGCGCAGGAGCCTTGATGAGGCCGTTTCTACCCGGAAT
TCGCCACGTGGGAGCAAAGATTTCGCGGGTGGGTCTTCCGGGTTTTCGGGTTTCGAGTCGGATTCGGCTTTGAAGAGAGG
GCTTCCACTTCCTACGCCGTCTGGGTCTGGGAGTGATCATGGGATTGTTGGGGTTGGGTTGGGATCTGGGTCTGCTTCTG
GTTCCATGTCCAGTGTGAGCTCTTCTGGGTCATCCGGTGAGGATCATCCAATTGCAAACGATCATAACAGTAGTCCTTTT
GTGGGTACACAGAGGACATGGTGATATAACGTTCAATGCGAGGTCAAGGAGCCCTGGTCCAGGATCAAGAAGTCCAGGTC
CTGGGTCTAGA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002529731.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] gb|EEF32660.1| mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative [Ricinus communis] 167 6e-49
  Manihot esculenta blastn  cassava4.1_005325m|PACid:17973662 882 0.0
  FGENESH CDS blastn  scaffold06948_FGENESH71 12 exon (s) 692141 - 696652 2208 bp, chain - 755 0.0
  Arabidopsis thaliana blastx  AT1G53570.1 | Symbols: MAP3KA, MAPKKK3 | mitogen-activated protein kinase kinase kinase 3 | chr1:19987391-19990733 FORWARD LENGTH=609 77.8 1e-15
  Populus trichocarpa blastx  POPTR_0007s04070.1|PACid:18243224 128 2e-33
  Vitis vinifera blastx  GSVIVT01026487001|PACid:17834182 107 7e-29
  Ricinus communis blastx  29691.m000286|PACid:16805903 167 2e-51
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
detail
Sequence: CAS01_032_K15.f_1_ORF2  Length: 136 aa
noIPR
unintegrated
unintegrated
seg[29-40]? NA seg seg[53-72]? NA seg seg[90-115]? NA seg segseg
Sequence: CAS01_032_K15.f_2_ORF1  Length: 103 aa
No hits reported.
Sequence: CAS01_032_K15.f_2_ORF2  Length: 51 aa
noIPR
unintegrated
unintegrated
seg[35-51]? NA seg segseg
Sequence: CAS01_032_K15.f_4_ORF2  Length: 143 aa
noIPR
unintegrated
unintegrated
seg[11-33]? NA seg seg[94-108]? NA seg segseg
Sequence: CAS01_032_K15.f_5_ORF2  Length: 63 aa
noIPR
unintegrated
unintegrated
seg[42-53]? NA seg segseg
Sequence: CAS01_032_K15.f_6_ORF1  Length: 99 aa
noIPR
unintegrated
unintegrated
seg[62-81]? NA seg segseg