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Summary
Sequence ID CAS01_030_P17.f (DB930858)
Sequence Length 618 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold10957
Related probe ID of RIKEN ver.1 microarray  R_Mes01_008587 (Scaffold10957)
 
 
Sequence
>CAS01_030_P17.f
GGTTGATTCTCAGAGCCAAACAGGAGGCGGGGAAAGAGTGAGGGAAAGTGAGAGAAACAGCGAGAAAATTGATAATTAGA
ACTTAGTAGTAGAGGAAGAAGCCATAGGAAAGAAAGCGAGGGAAGGCAGACAGATTAAACAGAGATAAGAGGAGGAAATG
AAGCACATTTTCAAGAAGCTACACATAGGGAGTAACCACGAGCCACATCGGTCTCTTTCCAAGAATTAATCGTGAACCAA
ATAATTATAATCAGTCATCATTAGCTTCTACCAGTTCTACCATGTCTGATAAGGTTTATTCTCAAGGCCTCAAGTCATCT
GGTAATTTGAATACGGCCAGTAGAGATGGCAATGATACAAATGCTTCAAGTGGTACATCTTCAGCTTTGGCACCTGGCAT
GAATCAATGCTATAACTCATCTTTGGTTGAGGAAGTAAACTCCAGTTTTAAAGAAGAAAATTCTAGGGATGCAAAGAATT
TCGCAAAAGATGCAGAACGCATGGTTAAAGATAATGAAAATAGTGAAATTTGTTCCCATGATAGGAGAAAGTCCTCGCAT
GACAGATTTTTGGGGACCAACCTGAAACTAAAGGAACCAGAAAGTCCTAGCTCATCAA

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002512264.1| map3k delta-1 protein kinase, putative [Ricinus communis] gb|EEF49716.1| map3k delta-1 protein kinase, putative [Ricinus communis] 180 1e-43
  Manihot esculenta blastn  cassava4.1_000982m|PACid:17961705 803 0.0
  FGENESH CDS blastn  scaffold04285_FGENESH37 17 exon (s) 330783 - 340736 3393 bp, chain - 803 0.0
  Arabidopsis thaliana blastx - - -
  Populus trichocarpa blastx  POPTR_0030s00300.1|PACid:18210914 157 6e-39
  Vitis vinifera blastx  GSVIVT01021884001|PACid:17830861 68.9 2e-12
  Ricinus communis blastx  30128.m008649|PACid:16818239 180 4e-46
 
 
Gene Ontology 
InterProScan
GO:0005783
Cellular Component
endoplasmic reticulum
 
 
InterProScan result 
Sequence: CAS01_030_P17.f_3_ORF2  Length: 143 aa
noIPR
unintegrated
unintegrated
seg[23-33]? NA seg segseg
Sequence: CAS01_030_P17.f_5_ORF1  Length: 68 aa
InterPro
IPR000886
PTM
Endoplasmic reticulum, targeting sequence
PS00014[65-68]? NA PS00014 ER_TARGETER_TARGET
Sequence: CAS01_030_P17.f_6_ORF1  Length: 56 aa
No hits reported.