Sequence ID | CAS01_030_P17.f (DB930858) | |
Sequence Length | 618 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold10957 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_008587 (Scaffold10957) |
>CAS01_030_P17.f GGTTGATTCTCAGAGCCAAACAGGAGGCGGGGAAAGAGTGAGGGAAAGTGAGAGAAACAGCGAGAAAATTGATAATTAGA ACTTAGTAGTAGAGGAAGAAGCCATAGGAAAGAAAGCGAGGGAAGGCAGACAGATTAAACAGAGATAAGAGGAGGAAATG AAGCACATTTTCAAGAAGCTACACATAGGGAGTAACCACGAGCCACATCGGTCTCTTTCCAAGAATTAATCGTGAACCAA ATAATTATAATCAGTCATCATTAGCTTCTACCAGTTCTACCATGTCTGATAAGGTTTATTCTCAAGGCCTCAAGTCATCT GGTAATTTGAATACGGCCAGTAGAGATGGCAATGATACAAATGCTTCAAGTGGTACATCTTCAGCTTTGGCACCTGGCAT GAATCAATGCTATAACTCATCTTTGGTTGAGGAAGTAAACTCCAGTTTTAAAGAAGAAAATTCTAGGGATGCAAAGAATT TCGCAAAAGATGCAGAACGCATGGTTAAAGATAATGAAAATAGTGAAATTTGTTCCCATGATAGGAGAAAGTCCTCGCAT GACAGATTTTTGGGGACCAACCTGAAACTAAAGGAACCAGAAAGTCCTAGCTCATCAA |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002512264.1| map3k delta-1 protein kinase, putative [Ricinus communis] gb|EEF49716.1| map3k delta-1 protein kinase, putative [Ricinus communis] | 180 | 1e-43 |
Manihot esculenta | blastn | cassava4.1_000982m|PACid:17961705 | 803 | 0.0 |
FGENESH CDS | blastn | scaffold04285_FGENESH37 17 exon (s) 330783 - 340736 3393 bp, chain - | 803 | 0.0 |
Arabidopsis thaliana | blastx | - | - | - |
Populus trichocarpa | blastx | POPTR_0030s00300.1|PACid:18210914 | 157 | 6e-39 |
Vitis vinifera | blastx | GSVIVT01021884001|PACid:17830861 | 68.9 | 2e-12 |
Ricinus communis | blastx | 30128.m008649|PACid:16818239 | 180 | 4e-46 |
InterProScan |
GO:0005783
Cellular Component endoplasmic reticulum |
Sequence: CAS01_030_P17.f_3_ORF2 Length: 143 aa | |||||||
noIPR unintegrated |
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Sequence: CAS01_030_P17.f_5_ORF1 Length: 68 aa | |||||||
InterPro IPR000886 PTM |
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Sequence: CAS01_030_P17.f_6_ORF1 Length: 56 aa | |
No hits reported. |