Sequence ID | CAS01_030_O21.r (DB948384) | |
Sequence Length | 552 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold08249 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_006345 (Scaffold08249) |
>CAS01_030_O21.r TACGGATGATAAAAGGCTTCAGAGTACACTGAAGAGAATAGGAGTGAATGCTATTCCTGCAATTGAGAACAACCATCCAG TGTCTCTAGAAAACACAGTGATTCAGTTTGTGAACCCCAAAGTTCAAGCATCAATTGCTGCCAATACATGGGTTGTTAGC GGCTCTCCGCAGACTAAGAAATTGCAAGATATTCTCCCTCAAGTACTAAGCCATTTGGGTCCTGATAATTTGGACAACTT GAAGAAGTTGGCGGAGCAGATCCAGAAGCAGGTACCTAGTGATGGTGCTCCAGCAACTGCAGCACAAGAGGATGATGATG AGGTCCCAGAGCTTGTAGCTGGGGAGACTTTTGAAGCTGCTGCAGAGGAGAGTAACGCTAACCCTGCTTCTTAGGAAATA TAGACAGGGAGTTTGTGCTATTTTATACACTTCCCACCTTTTTGTTTTTCTTTTTTCCCAAGTTCTTGGTTTTGTAGGTT ATAACTCGATCATTCATCTTATTTTCTAGAGACACTGGATGGTTGTTCAGATCCGCTTCATACTTTCTGAGC |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | gb|ADF59041.1| putative NAC transcription factor [Jatropha curcas] | 200 | 1e-49 |
Manihot esculenta | blastn | cassava4.1_017977m|PACid:17974422 | 634 | 0.0 |
FGENESH CDS | blastn | scaffold08100_FGENESH1 6 exon (s) 4243 - 8556 561 bp, chain + | 426 | 1e-119 |
Arabidopsis thaliana | blastx | AT1G17880.1 | Symbols: BTF3, ATBTF3 | basic transcription factor 3 | chr1:6152572-6153425 REVERSE LENGTH=165 | 179 | 1e-45 |
Populus trichocarpa | blastx | POPTR_0012s03490.1|PACid:18229419 | 194 | 5e-50 |
Vitis vinifera | blastx | GSVIVT01029373001|PACid:17836218 | 186 | 8e-48 |
Ricinus communis | blastx | 29662.m000456|PACid:16805099 | 192 | 1e-49 |
InterProScan |
No hits found |
Sequence: CAS01_030_O21.r_2_ORF1 Length: 130 aa | ||||||||||
InterPro IPR002715 Domain |
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noIPR unintegrated |
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Sequence: CAS01_030_O21.r_3_ORF2 Length: 56 aa | |||||||
noIPR unintegrated |
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Sequence: CAS01_030_O21.r_4_ORF2 Length: 63 aa | |||||||
noIPR unintegrated |
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Sequence: CAS01_030_O21.r_5_ORF2 Length: 90 aa | |||||||
noIPR unintegrated |
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