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Summary
Sequence ID CAS01_030_O21.r (DB948384)
Sequence Length 552 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold08249
Related probe ID of RIKEN ver.1 microarray  R_Mes01_006345 (Scaffold08249)
 
 
Sequence
>CAS01_030_O21.r
TACGGATGATAAAAGGCTTCAGAGTACACTGAAGAGAATAGGAGTGAATGCTATTCCTGCAATTGAGAACAACCATCCAG
TGTCTCTAGAAAACACAGTGATTCAGTTTGTGAACCCCAAAGTTCAAGCATCAATTGCTGCCAATACATGGGTTGTTAGC
GGCTCTCCGCAGACTAAGAAATTGCAAGATATTCTCCCTCAAGTACTAAGCCATTTGGGTCCTGATAATTTGGACAACTT
GAAGAAGTTGGCGGAGCAGATCCAGAAGCAGGTACCTAGTGATGGTGCTCCAGCAACTGCAGCACAAGAGGATGATGATG
AGGTCCCAGAGCTTGTAGCTGGGGAGACTTTTGAAGCTGCTGCAGAGGAGAGTAACGCTAACCCTGCTTCTTAGGAAATA
TAGACAGGGAGTTTGTGCTATTTTATACACTTCCCACCTTTTTGTTTTTCTTTTTTCCCAAGTTCTTGGTTTTGTAGGTT
ATAACTCGATCATTCATCTTATTTTCTAGAGACACTGGATGGTTGTTCAGATCCGCTTCATACTTTCTGAGC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  gb|ADF59041.1| putative NAC transcription factor [Jatropha curcas] 200 1e-49
  Manihot esculenta blastn  cassava4.1_017977m|PACid:17974422 634 0.0
  FGENESH CDS blastn  scaffold08100_FGENESH1 6 exon (s) 4243 - 8556 561 bp, chain + 426 1e-119
  Arabidopsis thaliana blastx  AT1G17880.1 | Symbols: BTF3, ATBTF3 | basic transcription factor 3 | chr1:6152572-6153425 REVERSE LENGTH=165 179 1e-45
  Populus trichocarpa blastx  POPTR_0012s03490.1|PACid:18229419 194 5e-50
  Vitis vinifera blastx  GSVIVT01029373001|PACid:17836218 186 8e-48
  Ricinus communis blastx  29662.m000456|PACid:16805099 192 1e-49
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_030_O21.r_2_ORF1  Length: 130 aa
InterPro
IPR002715
Domain
Nascent polypeptide-associated complex NAC
PF01849[1-60]T 2.6e-18 PF01849 NACNAC
PS51151[1-65]T 12.866 PS51151 NAC_ABNAC_AB
noIPR
unintegrated
unintegrated
PTHR10351[2-123]T 1.6e-33 PTHR10351 TRANSCRIPTION FACTOR BTF3TRANSCRIPTION FACTOR BTF3
seg[118-130]? NA seg segseg
Sequence: CAS01_030_O21.r_3_ORF2  Length: 56 aa
noIPR
unintegrated
unintegrated
seg[3-22]? NA seg segseg
Sequence: CAS01_030_O21.r_4_ORF2  Length: 63 aa
noIPR
unintegrated
unintegrated
seg[2-37]? NA seg segseg
Sequence: CAS01_030_O21.r_5_ORF2  Length: 90 aa
noIPR
unintegrated
unintegrated
seg[70-86]? NA seg segseg