Home > Keyword search > CAS01_028_K03.f

Summary
Sequence ID CAS01_028_K03.f (DB930014)
Sequence Length 490 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  Mapped
Transcript scaffold composed of the full-length cDNA(s)  Scaffold10819
Related probe ID of RIKEN ver.1 microarray  R_Mes01_008451 (Scaffold10819)
 
 
Sequence
>CAS01_028_K03.f
GAATCGAGAGACGCCAAGAAAGCCAGTTGCCTTTGGCTTCACGGTTTTCACACTCTCTTCTCGAACAAACGCCATTGCTC
TGTTCTACTACCAAGGCGACAAAAACCTCCCTTTGCATTAAGGAAGGGAGGAAGAGGAGAGGGTACTTGCAGATTGATAG
TCATGGCCACAAATAATAAAGACTCGAGCTCTGCTTCAACTGCAGATGCTGCTCATGGTACTAAAGTTAAAGGAGTGCCA
ACACATGGGGGTCGCTATGTTCAATACAATGTTTATGGTAACTTGTTTGAGGTATCGAGCAAGTACGTGCCTCCCATTCG
CCCCATCGGCCGTGGCGCTTATGGCATTGTTTGTGCTGCTGTGAATTCAGAGACACGTGAGGAAGTTGCCATTAAGAAGA
TTGGTAATGCTTTTGACAACAGAATAGATGCCAAAAGAACGCTGAGAGAGATTAAGCTTCTTCGCCACATGGACCATGAA
AATGTTATTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002509851.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF51238.1| big map kinase/bmk, putative [Ricinus communis] 195 2e-48
  Manihot esculenta blastn  cassava4.1_009399m|PACid:17971019 650 0.0
  FGENESH CDS blastn  scaffold05280_FGENESH70 6 exon (s) 565863 - 569281 1170 bp, chain - 650 0.0
  Arabidopsis thaliana blastx  AT4G01370.1 | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376 163 6e-41
  Populus trichocarpa blastx  POPTR_0003s13170.2|PACid:18218343 184 2e-47
  Vitis vinifera blastx  GSVIVT01019406001|PACid:17829033 177 3e-45
  Ricinus communis blastx  30190.m011265|PACid:16823622 195 1e-50
 
 
Gene Ontology 
InterProScan
GO:0004672
Molecular Function
protein kinase activity
GO:0005524
Molecular Function
ATP binding
GO:0006468
Biological Process
protein amino acid phosphorylation
 
 
InterProScan result 
Sequence: CAS01_028_K03.f_1_ORF1  Length: 163 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[106-163]T 9e-26 PD000001 Q8LT16_SOLTU_Q8LT16;Q8LT16_SOLTU_Q8LT16;
PS50011[103-163]T 11.863 PS50011 PROTEIN_KINASE_DOMPROTEIN_KINASE_DOM
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[82-163]T 1.9e-13 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
InterPro
IPR017441
Conserved_site
Protein kinase ATP binding, conserved site
PS00107[109-133]T 8e-5 PS00107 PROTEIN_KINASE_ATPPROTEIN_KINASE_ATP
InterPro
IPR017442
Domain
Serine/threonine protein kinase-related
PF00069[103-163]T 5.7e-13 PF00069 PkinasePkinase
noIPR
unintegrated
unintegrated
G3DSA:3.30.200.20[73-163]T 3e-21 G3DSA:3.30.200.20 no descriptionno description
PTHR11295[74-163]T 8e-51 PTHR11295 CDC2, MAP KINASE-RELATEDCDC2, MAP KINASE-RELATED
PTHR11295:SF69[74-163]T 8e-51 PTHR11295:SF69 MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATEDMITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATED
seg[56-71]? NA seg segseg
Sequence: CAS01_028_K03.f_2_ORF2  Length: 67 aa
noIPR
unintegrated
unintegrated
seg[11-24]? NA seg segseg
Sequence: CAS01_028_K03.f_3_ORF1  Length: 57 aa
No hits reported.
Sequence: CAS01_028_K03.f_4_ORF2  Length: 56 aa
No hits reported.
Sequence: CAS01_028_K03.f_5_ORF2  Length: 54 aa
No hits reported.
Sequence: CAS01_028_K03.f_5_ORF3  Length: 53 aa
No hits reported.
Sequence: CAS01_028_K03.f_6_ORF1  Length: 49 aa
noIPR
unintegrated
unintegrated
seg[11-28]? NA seg segseg
Sequence: CAS01_028_K03.f_6_ORF2  Length: 54 aa
noIPR
unintegrated
unintegrated
seg[1-16]? NA seg segseg