Summary
| Sequence ID | CAS01_027_N05.f (DB929725) | |
| Sequence Length | 524 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | - | |
| Gbrowse Ptr | - | |
| Gbrowse Vvi | - | |
| Gbrowse Ath | - | |
| Transcript scaffold composed of the full-length cDNA(s) | Scaffold10755 | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_008388 (Scaffold10755) |
| >CAS01_027_N05.f GAGTCCTCCATCTTATAAGGCCCCTACGATTCATGCCCCATACGAATTTGGAAATTCTGACATCTTCCAGCTGGGCTCAT CGATTCCCCAAATTCCATTACTAACTTCACAGCTTTCCTAGAAATTGAGATTCCAGAATTCGAATTCCCTAAAAAATTGG CATAAAAAGTTCGTATAATTCATCCCTATAATCCTTCAATTTTATTTTCTCTAGGGTTTGATACGCTCGCCCATGGGTGA ACGGAAAATAGAGGACTTACCTCTTCCGTCTCTGTTTGAGCAAGCTCGGAAGATCCATTTAACCGCTACGGAGTCCACCG CTGATCAGGAGATGGTGAAGAAGGGATGTGTGGCACTGGAGAGGTGCGAGGAAATGATAAATAAACTTGGGTTGTTCTCA GCGAATGAAACCAAGGATGATATCAGCACTACCAATCTTAAATATATNTTGTTCTGTTCTTTTGTTGTAGGTTCCATATT ATCTTGCTGAGCTAACTGAAAAAATATCACAGATGATAGAATGC |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | ref|XP_002532781.1| PP2A regulatory subunit TAP46, putative [Ricinus communis] gb|EEF29600.1| PP2A regulatory subunit TAP46, putative [Ricinus communis] | 115 | 4e-27 |
| Manihot esculenta | blastn | cassava4.1_008946m|PACid:17981231 | 436 | 1e-122 |
| FGENESH CDS | blastn | scaffold00224_FGENESH1 8 exon (s) 8961 - 13140 1107 bp, chain + | 436 | 1e-122 |
| Arabidopsis thaliana | blastx | AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein of 46 kD | chr5:21485654-21487869 REVERSE LENGTH=405 | 99.4 | 3e-24 |
| Populus trichocarpa | blastx | POPTR_0012s02360.1|PACid:18230480 | 110 | 1e-26 |
| Vitis vinifera | blastx | GSVIVT01038559001|PACid:17842795 | 111 | 9e-28 |
| Ricinus communis | blastx | 29475.m000231|PACid:16802916 | 115 | 2e-29 |
| InterProScan |
| GO:0009607
Biological Process response to biotic stimulus |
| GO:0009966
Biological Process regulation of signal transduction |
| Sequence: CAS01_027_N05.f_2_ORF2 Length: 91 aa | ||||||||||
| InterPro IPR007304 Family |
| |||||||||
| noIPR unintegrated |
| |||||||||
![[13-79]T 2.7e-34 PTHR10933 IMMUNOGLOBULIN-BINDING PROTEIN 1-RELATED](http://pmix.psc.riken.jp/img/interpro/X4.gif){kind=small}
![[15-77]T 3.8e-28 PF04177 TAP42](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
| Sequence: CAS01_027_N05.f_4_ORF1 Length: 65 aa | |||||||
| noIPR unintegrated |
| ||||||
![[30-39]? NA seg seg](http://pmix.psc.riken.jp/img/interpro/G.gif){kind=small}
| Sequence: CAS01_027_N05.f_6_ORF2 Length: 51 aa | |
| No hits reported. | |
