Summary
| Sequence ID | CAS01_025_O06.f (DB929004) | |
| Sequence Length | 583 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | - | |
| Gbrowse Ptr | - | |
| Gbrowse Vvi | - | |
| Gbrowse Ath | - | |
| Transcript scaffold composed of the full-length cDNA(s) | Scaffold10628 | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_008261 (Scaffold10628) |
| >CAS01_025_O06.f GGAGGCGCATATAATAATCTTCCCATTTTTGCTCATGTGTGGAGACCTGCAAACTTTGTGTGTTACCGTTTTGTTTATCC TGCTGAAAAGCCATTGAAAACCTCTCATCGAGAGAAAATGGAACCTAAACCTGTCAAATTATTCGTGAAGGTGATGAATT CGGAAGATCCAACGATAGAAATCCATGCAGATTCTGATGATTCAATAAAGTCTATCCATGAGAAAATTCTAGTGGCAGCT AGAATCCCAGTTACAGAGCAGAAATTATTCCATAATGGGAAGCAACTAGATCAGTGTCTTCACACACTCGAAGACTGCTC AATTGAAAACGAAGCTTCGCTGGAGTTGAAGGTAGAACTCAGGTGGGACGACTCGGACGAATCATCAGCACTTCTCCAAA AGATTCACAAAATGAGTTCAAACTTTTGCCGCATGTGCCAAGGGGAATCTGTCTCCGAAGATCAAGATGTCTCGGATCAT GATTACAGGACCATTCTCGAGGCGTTTATACTCCCAGAAGAAAAGGATTTGGAGATTCTTAATTTGTATTCTGTCCCTGC GACTATGGTTATGCTTTATAAGT |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | emb|CBI33105.3| unnamed protein product [Vitis vinifera] | 86.7 | 2e-15 |
| Manihot esculenta | blastn | - | - | - |
| FGENESH CDS | blastn | scaffold11499_FGENESH3 2 exon (s) 55490 - 57172 1545 bp, chain + | 813 | 0.0 |
| Arabidopsis thaliana | blastx | AT4G12570.1 | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873 | 69.3 | 2e-12 |
| Populus trichocarpa | blastx | POPTR_0016s05980.1|PACid:18250155 | 72.0 | 3e-13 |
| Vitis vinifera | blastx | GSVIVT01003328001|PACid:17818430 | 86.7 | 7e-18 |
| Ricinus communis | blastx | 29206.m000140|PACid:16802454 | 79.3 | 1e-15 |
| InterProScan |
| GO:0006464
Biological Process protein modification process |
| Sequence: CAS01_025_O06.f_1_ORF1 Length: 194 aa | |||||||||||||
| InterPro IPR000626 Domain |
| ||||||||||||
| noIPR unintegrated |
| ||||||||||||
![[52-121]T 5.1e-13 PF00240 ubiquitin](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
![[45-119]T 9.6e-06 SM00213 no description](http://pmix.psc.riken.jp/img/interpro/R.gif){kind=small}
![[45-121]T 14.012 PS50053 UBIQUITIN_2](http://pmix.psc.riken.jp/img/interpro/M.gif){kind=small}
![[47-126]T 1e-07 G3DSA:3.10.20.90 no description](http://pmix.psc.riken.jp/img/interpro/X2.gif){kind=small}
![[44-123]T 8.4e-07 PTHR10666 UBIQUITIN](http://pmix.psc.riken.jp/img/interpro/X4.gif){kind=small}
![[47-118]T 5.9e-12 SSF54236 Ubiquitin-like](http://pmix.psc.riken.jp/img/interpro/B.gif){kind=small}
| Sequence: CAS01_025_O06.f_2_ORF2 Length: 56 aa | |
| No hits reported. | |
| Sequence: CAS01_025_O06.f_3_ORF2 Length: 51 aa | |
| No hits reported. | |
| Sequence: CAS01_025_O06.f_4_ORF1 Length: 54 aa | |
| No hits reported. | |
| Sequence: CAS01_025_O06.f_6_ORF2 Length: 61 aa | |
| No hits reported. | |
