Home > Keyword search > CAS01_024_P05.f

Summary
Sequence ID CAS01_024_P05.f (DB928674)
Sequence Length 625 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold08192
Related probe ID of RIKEN ver.1 microarray  R_Mes01_006309 (Scaffold08192)
 
 
Sequence
>CAS01_024_P05.f
GGTGATACGCCTCTGTTGTCGGTGTTGAGATCTTGCAGCTTCTGCGCACTCTAAGCCACACACTCTACAGCTTCCTTTGA
AGATTAATAAAAGGAGAGAAAGAAACCAAAGCTATAACAGCTCTGGTCTAGGGTTCTGAATTTTTTTGGATCTATACGCA
AAGGAAGACGGAAAGGTTAACGGAAAGGTTAAGGAAATGCTTGATTTGTTATTCTTTTGGTTGCTGAATTGTCGAAAGTC
GGTCGCCGACTTATGCTAGTTGGATTTTGGAAGGAGGAGGAGGCGGAGGAGTGTATGAGAGAATTGGTTGCTGTTTGGAA
TTTATTTGTGGTGTTGAAGGATTCGAGGAGGAGAATATGGTGGGATTGTGGGCTGTTCATAAGGAGCAGGGGTAGGTGGG
GTAAATGTGGCTGATCCTCTCTTCGTAATTATTTTTGTTGCTTCTGGTATTGTTGAGGTTTATTATTGTTGTTATTGCTG
GTTTGCTTTCTGAACTGGCTCAAGCAGATCGTTGTTTGGACAAACGCTTGTTAAGTTTGGCAGTTTTGATAGAGAGAACC
AAAAGATAATGCAGCAAGATCACCGGAAGAAGATTCAACAGAGATGGACTTTTTCTCTGAATATG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx - - -
  Manihot esculenta blastn - - -
  FGENESH CDS blastn - - -
  Arabidopsis thaliana blastx - - -
  Populus trichocarpa blastx - - -
  Vitis vinifera blastx - - -
  Ricinus communis blastx - - -
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_024_P05.f_1_ORF2  Length: 69 aa
No hits reported.
Sequence: CAS01_024_P05.f_3_ORF1  Length: 55 aa
noIPR
unintegrated
unintegrated
seg[16-21]? NA seg segseg
Sequence: CAS01_024_P05.f_6_ORF2  Length: 79 aa
noIPR
unintegrated
unintegrated
seg[7-16]? NA seg segseg