Summary
| Sequence ID | CAS01_019_C24.f (DB926609) | |
| Sequence Length | 606 nucleotides | |
| Gbrowse Mes | ||
| Gbrowse Rco | Mapped | |
| Gbrowse Ptr | Mapped | |
| Gbrowse Vvi | Mapped | |
| Gbrowse Ath | Mapped | |
| Transcript scaffold composed of the full-length cDNA(s) | Scaffold10200 | |
| Related probe ID of RIKEN ver.1 microarray | R_Mes01_007838 (Scaffold10200) |
| >CAS01_019_C24.f GAGGTCCTCCAATATAACTGTCTTTGTGCAATCCAATACGTCTTATCATCCTTCAAGAATCTCTGCAATTGCAAATAATG GCGAGCTGTTTGAGAAGATATGGAAGAAGACTCTCCGTCTCAATTTGCGAGAAGAGGGAACTCTCCACAGCTTGTGAAGG TCAGATTATTCTACAACAACATCAACAACTCCAACAAACTGCTAAATCAATGAACCTCTGTTCTGCCATCAACCAAGCTC TCCATCTCGCCTTAGAAACCGATCCTCGTTCTTATGTATTTGGAGAAGATGTAAGCTTTGGTGGGGTATTTCGTTGCACA ACTGGACTGACAGAACGATTTGGCAAAAATCGAGTCTTCAATACTCCCCTTTGTGAGCAGGGGATTGTTGGATTTGGCAT TGGTCTGGCAGCAATGGGGAATAGAGCCATAGCAGAAATTCAGTTTGCAGATTACATCTATCCTGCTTTTGATCAGATTG TTAATGAAGCTGCAAAGTTCAGATACCGGAGTGGGAATCAGTATGATTGTGGAGGTTTAACCATAAGAGCACCATATGGA GCTGTGGGCCATGGTGGACATTATCACTCTCAATCCCCTGAAGCTT |
| vs DB | Program | Description | Score | |
|---|---|---|---|---|
| NCBI nr | blastx | ef|XP_002304849.1| predicted protein [Populus trichocarpa] >gi|... 308 3e-82 >ref|XP_002304849.1| predicted protein [Populus trichocarpa] gb|EEE79828.1| predicted protein [Populus trichocarpa] | 308 | 3e-82 |
| Manihot esculenta | blastn | cassava4.1_010205m|PACid:17971962 | 1049 | 0.0 |
| FGENESH CDS | blastn | scaffold06582_FGENESH110 15 exon (s) 755987 - 761959 1299 bp, chain - | 791 | 0.0 |
| Arabidopsis thaliana | blastx | AT3G13450.1 | Symbols: DIN4 | Transketolase family protein | chr3:4382340-4384295 REVERSE LENGTH=358 | 268 | 3e-72 |
| Populus trichocarpa | blastx | POPTR_0003s20830.1|PACid:18217216 | 308 | 2e-84 |
| Vitis vinifera | blastx | GSVIVT01025496001|PACid:17833479 | 257 | 2e-69 |
| Ricinus communis | blastx | 28842.m000931|PACid:16801820 | 300 | 3e-82 |
| InterProScan |
| No hits found |
| Sequence: CAS01_019_C24.f_2_ORF1 Length: 51 aa | |
| No hits reported. | |
| Sequence: CAS01_019_C24.f_2_ORF2 Length: 56 aa | |||||||
| noIPR unintegrated |
| ||||||
![[10-21]? NA seg seg](http://pmix.psc.riken.jp/img/interpro/G.gif){kind=small}
| Sequence: CAS01_019_C24.f_3_ORF2 Length: 196 aa | |||||||||||||||||||
| InterPro IPR005475 Domain |
| ||||||||||||||||||
| noIPR unintegrated |
| ||||||||||||||||||
![[63-196]T 3.7e-48 PF02779 Transket_pyr](http://pmix.psc.riken.jp/img/interpro/H.gif){kind=small}
![[61-196]T 1.2e-48 G3DSA:3.40.50.970 no description](http://pmix.psc.riken.jp/img/interpro/X2.gif){kind=small}
![[97-196]T 1.5e-65 PTHR11624 DEHYDROGENASE RELATED](http://pmix.psc.riken.jp/img/interpro/X4.gif){kind=small}
![[61-196]T 1.2e-43 SSF52518 Thiamin diphosphate-binding fold (THDP-binding)](http://pmix.psc.riken.jp/img/interpro/B.gif){kind=small}
| Sequence: CAS01_019_C24.f_5_ORF2 Length: 55 aa | |
| No hits reported. | |
| Sequence: CAS01_019_C24.f_6_ORF2 Length: 94 aa | |
| No hits reported. | |
