Home > Keyword search > CAS01_014_P07.f

Summary
Sequence ID CAS01_014_P07.f (DB925085)
Sequence Length 583 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  Mapped
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold09962
Related probe ID of RIKEN ver.1 microarray  R_Mes01_007602 (Scaffold09962)
 
 
Sequence
>CAS01_014_P07.f
AAAAGAGAGACATGCAAAGAATATAAAACTGAAGCAATTAGATGGAGAAAATGGCAAATCCATACCCAAAAAAGGAAGCC
ATAAACCAAAAATACAGAGAAAAGAGTGAGGTGGGCAAATGCTAGAATCTAGTGGCTGTGGATTAAGGAGCCTGCGATTT
ATATGGGGAGCGGAACTTTTGTGGACGGCGTTCGTCGTTGGTTTCAACGCCGCAACACTTCTGCATCGTCATCATCTGCC
AGTAATAATTTTGTGAATGGTGCAGATACTGATCTCAGTGGCCACCCACTATCATCTGCTACTAGTGTGCATGAAAGGGG
AAGAAAGGAAGAGGGTGGTGAGCTGGAGAATCAGTTGACTGTTATTGAAGATTTTGATTTCTCTGGATTAAAGCACATTA
GAGTACCCAAACGAAGTACCCATTTTGCTTTTGGCTCTACTACTACCATCGGTCCACCCAAGAAGGGATCTGCTGAAGCA
GAATTCTTCACTGAATATGGAGAGGCAAGTAGATATCAAATACAAGAAGTCGTTGGGATGGGCAGTTATGGTGTTGTTTG
CTCTGCAATTGACACTCATACTG

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002534166.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF28215.1| big map kinase/bmk, putative [Ricinus communis] 152 4e-35
  Manihot esculenta blastn  cassava4.1_003987m|PACid:17986942 779 0.0
  FGENESH CDS blastn  scaffold02572_FGENESH2 11 exon (s) 7316 - 13275 1485 bp, chain - 585 1e-166
  Arabidopsis thaliana blastx  AT1G18150.3 | Symbols: ATMPK8 | Protein kinase superfamily protein | chr1:6244641-6247582 REVERSE LENGTH=589 115 3e-26
  Populus trichocarpa blastx  POPTR_0015s04380.1|PACid:18233390 138 3e-33
  Vitis vinifera blastx  GSVIVT01008408001|PACid:17821014 110 3e-25
  Ricinus communis blastx  28097.m000052|PACid:16799928 152 1e-37
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_014_P07.f_1_ORF2  Length: 150 aa
InterPro
IPR000719
Domain
Protein kinase, core
PD000001[128-150]T 7e-05 PD000001 Q6TAR9_MAIZE_Q6TAR9;Q6TAR9_MAIZE_Q6TAR9;
InterPro
IPR011009
Domain
Protein kinase-like
SSF56112[125-150]T 0.0018 SSF56112 Protein kinase-like (PK-like)Protein kinase-like (PK-like)
noIPR
unintegrated
unintegrated
PTHR11295[115-150]T 4.9e-15 PTHR11295 CDC2, MAP KINASE-RELATEDCDC2, MAP KINASE-RELATED
PTHR11295:SF69[115-150]T 4.9e-15 PTHR11295:SF69 MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATEDMITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-RELATED
seg[30-37]? NA seg seg[61-72]? NA seg segseg
Sequence: CAS01_014_P07.f_2_ORF2  Length: 64 aa
noIPR
unintegrated
unintegrated
seg[12-18]? NA seg segseg
Sequence: CAS01_014_P07.f_4_ORF1  Length: 64 aa
No hits reported.
Sequence: CAS01_014_P07.f_4_ORF2  Length: 76 aa
No hits reported.
Sequence: CAS01_014_P07.f_6_ORF2  Length: 54 aa
No hits reported.