Home > Keyword search > CAS01_014_E15.f

Summary
Sequence ID CAS01_014_E15.f (DB924836)
Sequence Length 628 nucleotides
Gbrowse Mes 
Gbrowse Rco  -
Gbrowse Ptr  -
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold09918
Related probe ID of RIKEN ver.1 microarray  R_Mes01_007558 (Scaffold09918)
 
 
Sequence
>CAS01_014_E15.f
GGAGTTATGGTAAAAAAGAAGTTATTGACCTTGAACTTCAACACTGTAGCTTCAAGCTTGTTCTTTTCTTGAACTACTTC
AATTTTATTTTCTTTCTTCTTTGAGCTGCATAAGTTTCAACTCTAAATTTGGGTTAGATACGAGAGAGCAAATATTTGCA
AATTAACTTTGTTTTTATGCCTTTCTCTGACACAGAGCAGATGGCGAACAGTGAATCGAATTCACTCCAACTGTCCGTGA
AATTGCCAAAAGGAGAAACAATAGAAATCCAATCGCATTCTAGTCATTTAGTAAGGTCCATCCATGAGAAAATTCTAATG
AAGTCTATGATTCCAGTTACTGAACAGAAATTATATTATCAGGGGATACAGCTAGAGCGGGAGAAGAAGCTTGAAGCCTA
CTCGATTAAAGACGAAGCTTGCCTCGAATTGATTATTGGATGCGATGACACATCGGAACCCTTGCAAGAGATTCACCAAT
TGAGTTCAAAAATTTGTCGCATGTGCCGAGACAAATCTGTCTCCGAAGATCCTAATTCTGATGACATAGAGACGATTGCC
AAACTGTTGGCACCTGAAACAGCAGAGAAATCGACGATTCTTATGATTTCGTATTCTATCCCTGCGAC

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|NP_192994.1| E3 ubiquitin-protein ligase UPL5 [Arabidopsis thaliana] sp|Q9SU29.1|UPL5_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL5; Short=Ubiquitin-protein ligase 5 emb|CAB41727.2| polyubiquitin-like protein [Arabidopsis thaliana] emb|CAB78300.1| polyubiquitin-like protein [Arabidopsis thaliana] dbj|BAF01094.1| polyubiquitin-like protein [Arabidopsis thaliana] gb|AEE83149.1| E3 ubiquitin-protein ligase UPL5 [Arabidopsis thaliana] 67.4 1e-09
  Manihot esculenta blastn  cassava4.1_030955m|PACid:17964842 593 1e-169
  FGENESH CDS blastn  scaffold09151_FGENESH14 3 exon (s) 120175 - 124666 2550 bp, chain + 801 0.0
  Arabidopsis thaliana blastx  AT4G12570.1 | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873 67.4 7e-12
  Populus trichocarpa blastx  POPTR_0016s01430.1|PACid:18251168 64.3 7e-11
  Vitis vinifera blastx  GSVIVT01003328001|PACid:17818430 61.6 3e-10
  Ricinus communis blastx  29206.m000140|PACid:16802454 56.6 9e-09
 
 
Gene Ontology 
InterProScan
GO:0006464
Biological Process
protein modification process
 
 
InterProScan result 
Sequence: CAS01_014_E15.f_3_ORF2  Length: 163 aa
InterPro
IPR000626
Domain
Ubiquitin
PF00240[35-103]T 2.5e-11 PF00240 ubiquitinubiquitin
SM00213[30-101]T 4.3e-06 SM00213 no descriptionno description
PS50053[30-100]T 14.491 PS50053 UBIQUITIN_2UBIQUITIN_2
noIPR
unintegrated
unintegrated
G3DSA:3.10.20.90[27-108]T 9.4e-11 G3DSA:3.10.20.90 no descriptionno description
PTHR10666[29-113]T 1.9e-10 PTHR10666 UBIQUITINUBIQUITIN
PTHR10666:SF6[29-113]T 1.9e-10 PTHR10666:SF6 UBIQUITIN 4UBIQUITIN 4
SSF54236[30-100]T 3.4e-14 SSF54236 Ubiquitin-likeUbiquitin-like
Sequence: CAS01_014_E15.f_5_ORF1  Length: 51 aa
No hits reported.