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Summary
Sequence ID CAS01_002_A23.r (DB939162)
Sequence Length 565 nucleotides
Gbrowse Mes 
Gbrowse Rco  Mapped
Gbrowse Ptr  Mapped
Gbrowse Vvi  -
Gbrowse Ath  -
Transcript scaffold composed of the full-length cDNA(s)  Scaffold00240
Related probe ID of RIKEN ver.1 microarray  R_Mes01_000184 (Scaffold00240)
 
 
Sequence
>CAS01_002_A23.r
AGAAGTGAAAGAAGCAGTCCTTTGCATAGGAAGCATGCATGTTTTTTGCCTAGGTATAGGATCTGTTCAATCGATGATGA
AACTGATATTGTCATAAAGCGTAGTGCAGTACAGTTTACTCGTGCAACTATTCAGAGTCCTCCAAAGTCAGAAACGACTG
AAGATCTGCAATCAACTGGAGATCTGCAATCGGCAAACAGAAATGCAGTAGCTATGCAGACCAGCTCTACCAAGCCGAAG
TGTGGCGCCCGTAGCCTGTTGAGGAGCGACAGTATCTGTGCTTCAAGGTGCATTGGCATGGTTGGAAATGATCGCGAAGT
ACATGCTCTCTGATTTTTACGTGCACACCATGGAGCGCCCCCACAAGAAGGGGACGTTTACAATTTAAAAATATATATTT
ATTCAGCTAGCATACTGCTGAAGATAAAAGATAGGGTACCACTCTGCTATTTCTCTTTTCATGCTAGCTGCTACTGTCTT
TTCGACACTTATATTGCTTGCATTCTCACTGTAAAAGCTGAGATGTGAGTGCAAGATTCAGCTACTGGGGTGTAGAAGTG
TTCCT

 
 
BLAST results
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002526023.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF36363.1| big map kinase/bmk, putative [Ricinus communis] 159 3e-37
  Manihot esculenta blastn  cassava4.1_006140m|PACid:17972634 533 1e-151
  FGENESH CDS blastn  scaffold00318_FGENESH46 9 exon (s) 373095 - 378216 1497 bp, chain - 533 1e-151
  Arabidopsis thaliana blastx  AT2G01450.4 | Symbols: ATMPK17, MPK17 | MAP kinase 17 | chr2:199722-202010 REVERSE LENGTH=486 52.8 2e-07
  Populus trichocarpa blastx  POPTR_0008s12890.1|PACid:18247511 147 5e-36
  Vitis vinifera blastx  GSVIVT01011749001|PACid:17823534 67.8 3e-12
  Ricinus communis blastx  29816.m000682|PACid:16809594 159 1e-39
 
 
Gene Ontology 
InterProScan
No hits found
 
 
InterProScan result 
Sequence: CAS01_002_A23.r_1_ORF1  Length: 110 aa
No hits reported.
Sequence: CAS01_002_A23.r_1_ORF2  Length: 64 aa
No hits reported.
Sequence: CAS01_002_A23.r_5_ORF2  Length: 59 aa
No hits reported.
Sequence: CAS01_002_A23.r_6_ORF2  Length: 81 aa
No hits reported.