Sequence ID | CAS01_002_A23.r (DB939162) | |
Sequence Length | 565 nucleotides | |
Gbrowse Mes | ||
Gbrowse Rco | Mapped | |
Gbrowse Ptr | Mapped | |
Gbrowse Vvi | - | |
Gbrowse Ath | - | |
Transcript scaffold composed of the full-length cDNA(s) | Scaffold00240 | |
Related probe ID of RIKEN ver.1 microarray | R_Mes01_000184 (Scaffold00240) |
>CAS01_002_A23.r AGAAGTGAAAGAAGCAGTCCTTTGCATAGGAAGCATGCATGTTTTTTGCCTAGGTATAGGATCTGTTCAATCGATGATGA AACTGATATTGTCATAAAGCGTAGTGCAGTACAGTTTACTCGTGCAACTATTCAGAGTCCTCCAAAGTCAGAAACGACTG AAGATCTGCAATCAACTGGAGATCTGCAATCGGCAAACAGAAATGCAGTAGCTATGCAGACCAGCTCTACCAAGCCGAAG TGTGGCGCCCGTAGCCTGTTGAGGAGCGACAGTATCTGTGCTTCAAGGTGCATTGGCATGGTTGGAAATGATCGCGAAGT ACATGCTCTCTGATTTTTACGTGCACACCATGGAGCGCCCCCACAAGAAGGGGACGTTTACAATTTAAAAATATATATTT ATTCAGCTAGCATACTGCTGAAGATAAAAGATAGGGTACCACTCTGCTATTTCTCTTTTCATGCTAGCTGCTACTGTCTT TTCGACACTTATATTGCTTGCATTCTCACTGTAAAAGCTGAGATGTGAGTGCAAGATTCAGCTACTGGGGTGTAGAAGTG TTCCT |
vs DB | Program | Description | Score | |
---|---|---|---|---|
NCBI nr | blastx | ref|XP_002526023.1| big map kinase/bmk, putative [Ricinus communis] gb|EEF36363.1| big map kinase/bmk, putative [Ricinus communis] | 159 | 3e-37 |
Manihot esculenta | blastn | cassava4.1_006140m|PACid:17972634 | 533 | 1e-151 |
FGENESH CDS | blastn | scaffold00318_FGENESH46 9 exon (s) 373095 - 378216 1497 bp, chain - | 533 | 1e-151 |
Arabidopsis thaliana | blastx | AT2G01450.4 | Symbols: ATMPK17, MPK17 | MAP kinase 17 | chr2:199722-202010 REVERSE LENGTH=486 | 52.8 | 2e-07 |
Populus trichocarpa | blastx | POPTR_0008s12890.1|PACid:18247511 | 147 | 5e-36 |
Vitis vinifera | blastx | GSVIVT01011749001|PACid:17823534 | 67.8 | 3e-12 |
Ricinus communis | blastx | 29816.m000682|PACid:16809594 | 159 | 1e-39 |
InterProScan |
No hits found |
Sequence: CAS01_002_A23.r_1_ORF1 Length: 110 aa | |
No hits reported. |
Sequence: CAS01_002_A23.r_1_ORF2 Length: 64 aa | |
No hits reported. |
Sequence: CAS01_002_A23.r_5_ORF2 Length: 59 aa | |
No hits reported. |
Sequence: CAS01_002_A23.r_6_ORF2 Length: 81 aa | |
No hits reported. |