Home > Microarray > Keyword search > R_Mes01_008261

Summary
Probe sequence ID R_Mes01_008261
Target sequence ID Scaffold10628
Sequence composing scaffold 
Probe sequence length 60 nucleotides
Probe sequence
>R_Mes01_008261|Scaffold10628
GAATCCCAGTTACAGAGCAGAAATTATTCCATAATGGGAAGCAACTAGATCAGTGTCTTC
 
 
BLAST results
Query ID: CAS01_025_O06.f
vs DB Program Description Score E value
  NCBI nr blastx  emb|CBI33105.3| unnamed protein product [Vitis vinifera] 86.7 2e-15
  Manihot esculenta blastn - - -
  FGENESH CDS blastn  scaffold11499_FGENESH3 2 exon (s) 55490 - 57172 1545 bp, chain + 813 0.0
  Arabidopsis thaliana blastx  AT4G12570.1 | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873 69.3 2e-12
  Populus trichocarpa blastx  POPTR_0016s05980.1|PACid:18250155 72.0 3e-13
  Vitis vinifera blastx  GSVIVT01003328001|PACid:17818430 86.7 7e-18
  Ricinus communis blastx  29206.m000140|PACid:16802454 79.3 1e-15

Query ID: CAS01_025_O06.r
vs DB Program Description Score E value
  NCBI nr blastx  ref|XP_002527852.1| conserved hypothetical protein [Ricinus communis] gb|EEF34555.1| conserved hypothetical protein [Ricinus communis] 112 3e-23
  Manihot esculenta blastn  cassava4.1_023677m|PACid:17986575 420 1e-117
  FGENESH CDS blastn  scaffold09809_FGENESH19 4 exon (s) 474932 - 477234 882 bp, chain + 420 1e-117
  Arabidopsis thaliana blastx  AT4G12020.2 | Symbols: WRKY19, ATWRKY19, MAPKKK11, MEKK4 | protein kinase family protein | chr4:7201656-7209469 FORWARD LENGTH=1895 87.0 5e-18
  Populus trichocarpa blastx  POPTR_0002s08950.1|PACid:18245706 90.5 5e-19
  Vitis vinifera blastx  GSVIVT01023037001|PACid:17831649 96.7 4e-21
  Ricinus communis blastx  29609.m000604|PACid:16803633 112 1e-25