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Detailed information on R_Mes01_005479

Summary

Probe sequence ID		R_Mes01_005479
Target sequence ID		Scaffold06987
Sequence composing scaffold		Contig05823 AF101231 BM259680 BM259750 BM259768 BM259818 BM259908 BM259969 BM260013 BM260227 CAS01_002_A16.f (DB920421) CAS01_002_A16.r (DB939156) CAS01_006_F05.f (DB921952) CAS01_006_F05.r (DB940518) CAS01_008_O03.f (DB922886) CAS01_008_O03.r (DB941328) CAS01_008_P24.f (DB922930) CAS01_008_P24.r (DB941369) CAS01_010_L24.f (DB923566) CAS01_010_L24.r (DB941951) CAS01_013_K23.f (DB924614) CAS01_013_K23.r (DB942915) CAS01_013_P21.f (DB924730) CAS01_014_D10.f (DB924811) CAS01_014_I21.f (DB924938) CAS01_014_I21.r (DB943201) CAS01_016_G02.r (DB943800) CAS01_019_D22.f (DB926629) CAS01_019_L11.f (DB926792) CAS01_019_L11.r (DB944860) CAS01_022_D19.f (DB927703) CAS01_022_D19.r (DB945673) CAS01_024_C24.f (DB928405) CAS01_026_J04.f (DB929262) CAS01_026_K24.f (DB929304) CAS01_026_K24.r (DB947025) CAS01_026_O19.f (DB929392) CAS01_026_O19.r (DB947104) CAS01_027_G22.f (DB929580) CAS01_027_G22.r (DB947262) CAS01_029_D24.f (DB930235) CAS01_029_F21.f (DB930278) CAS01_029_F21.r (DB947863) CAS01_029_H11.f (DB930313) CAS01_029_L09.f (DB930399) CAS01_029_L09.r (DB947965) CAS01_030_B05.f (DB930528) CAS01_030_E05.f (DB930598) CAS01_030_E05.r (DB948152) CAS01_030_G03.f (DB930643) CAS01_030_G03.r (DB948193) CAS01_031_M06.r (DB948647) CAS01_032_O02.f (DB931566) CAS01_032_O02.r (DB949008) CAS01_034_H10.f (DB932155) CAS01_034_H10.r (DB949542) CAS01_044_N16.f (DB935955) CAS01_044_N16.r (DB952879) CAS01_045_O03.f (DB936333) CAS01_045_O03.r (DB953222) CAS01_045_O21.f (DB936351) CAS01_045_O21.r (DB953237) CAS01_047_B01.f (DB936753) CAS01_048_B11.f (DB937095) CAS01_048_B11.r (DB953920) CAS01_049_D02.f (DB937484) CAS01_049_E02.r (DB954293) CAS01_050_N11.f (DB938073) CAS01_050_N11.r (DB954796) CK640961 CK642725 CK645344 DV440907 DV440927 DV442141 DV442808 DV442835 DV442867 DV443436 DV443808 DV444063 DV444257 DV445150 DV445745 DV445860 DV446689 DV446730 DV446914 DV447856 DV447967 DV448453 DV448538 DV448919 DV449041 DV449849 DV450094 DV450305 DV450424 DV451660 DV451809 DV451945 DV452248 DV452975 DV453182 DV453259 DV453643 DV453813 DV454081 DV454083 DV454572 DV454894 DV455241 DV455990 DV456146 DV456317 DV456444 DV456613 DV456652 DV457177 DV457955 DV458126 DV458152 DV458895 DV458991 DV458993 M95930 M96583 CAS01_026_J04.r (DB946989)
Probe sequence length		60 nucleotides
Probe sequence		>R_Mes01_005479\|Scaffold06987 CCACGTGAACGGATGCAAGATGCGAGGTTGAATTCATAAAACTGTTGAACATTTGTTGCT

Summary |
BLAST results

BLAST results

**Query ID: Contig05823**
vs DB	Program	Description	Score	E value
NCBI nr	blastx	sp\|Q42915.1\|RBS_MANES RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor gb\|AAA99429.1\| ribulose 1,5-bisphosphate carboxylase [Manihot esculenta] gb\|AAF06099.1\| ribulose 1,5-bisphosphate carboxylase small chain precursor [Manihot esculenta]	378	1e-102
Manihot esculenta	blastn	cassava4.1_017243m\|PACid:17990746	1088	0.0
FGENESH CDS	blastn	scaffold10493_FGENESH3 3 exon (s) 25373 - 26217 549 bp, chain -	1088	0.0
Arabidopsis thaliana	blastx	AT5G38430.1 \| Symbols: \| Ribulose bisphosphate carboxylase (small chain) family protein \| chr5:15384350-15385155 REVERSE LENGTH=181	284	7e-77
Populus trichocarpa	blastx	POPTR_0005s15660.1\|PACid:18208907	280	2e-75
Vitis vinifera	blastx	GSVIVT01008288001\|PACid:17820914	240	8e-64
Ricinus communis	blastx	29974.m000232\|PACid:16814754	318	4e-87

**Query ID: CAS01_026_J04.r**
vs DB	Program	Description	Score	E value
NCBI nr	blastx	-	-	-
Manihot esculenta	blastn	-	-	-
FGENESH CDS	blastn	-	-	-
Arabidopsis thaliana	blastx	-	-	-
Populus trichocarpa	blastx	-	-	-
Vitis vinifera	blastx	-	-	-
Ricinus communis	blastx	-	-	-

Summary |
BLAST results